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| Mutant Information |
|---|
| Mutant Name | FN2258-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2258-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 22
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr2 | 1131723 | A-T | Homo | INTRON | |
| SBS | Chr2 | 1131724 | A-T | Homo | INTRON | |
| SBS | Chr2 | 17052917 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 19532677 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 15382298 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 28515264 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 33402787 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 3290404 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 12921884 | C-G | Homo | INTERGENIC | |
| SBS | Chr5 | 20448781 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 5903244 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 27851898 | A-G | Homo | INTERGENIC | |
| SBS | Chr7 | 24440 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 26718303 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 2581652 | T-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 10687784 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 1523454 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 48273 | C-T | Hetero | INTRON | |
| SBS | Chr11 | 48275 | G-T | Hetero | INTRON | |
| SBS | Chr11 | 3336506 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 28496489 | A-T | Homo | INTRON | |
| SBS | Chr12 | 4777005 | A-T | Hetero | INTERGENIC |
Deletions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 277001 | 318000 | 40999 | 8 |
| Deletion | Chr12 | 18856140 | 18856149 | 9 | |
| Deletion | Chr4 | 34681455 | 34681468 | 13 | |
| Deletion | Chr1 | 39314001 | 39353000 | 38999 | 10 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 31599902 | 31599905 | 2 | |
| Insertion | Chr12 | 4249578 | 4249581 | 2 |
Inversions: 5
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 3883201 | 4324400 | OsKitaake01g057600 |
| Inversion | Chr3 | 22845784 | 23255110 | |
| Inversion | Chr3 | 22845793 | 23255112 | |
| Inversion | Chr5 | 28212676 | 28273678 | 2 |
| Inversion | Chr5 | 28212685 | 28273689 | 2 |