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Mutant Information

Mutant Name	FN2259-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2259-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10558273 G-T Homo INTERGENIC
SBS Chr1 10558274 C-T Homo INTERGENIC
SBS Chr2 25734313 A-T Hetero INTERGENIC
SBS Chr2 34630380 C-G Homo UTR_5_PRIME
SBS Chr3 615985 G-A Hetero INTRON
SBS Chr4 3025978 G-A Hetero INTERGENIC
SBS Chr4 21166467 C-T Hetero INTERGENIC
SBS Chr4 36574566 T-A Hetero INTERGENIC
SBS Chr6 5180260 G-T Homo INTERGENIC
SBS Chr6 27761046 G-A Hetero INTRON
SBS Chr7 9583738 A-C Hetero INTERGENIC
SBS Chr7 13621230 G-T Hetero INTERGENIC
SBS Chr7 16158684 A-G Homo INTERGENIC
SBS Chr7 17562649 T-C Homo INTERGENIC
SBS Chr7 27110654 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g253500
SBS Chr8 22318371 C-T Homo INTERGENIC
SBS Chr8 26999737 T-C Homo NON_SYNONYMOUS_CODING OsKitaake08g219400
SBS Chr9 15275573 C-A Hetero INTERGENIC
SBS Chr10 2314125 T-A Hetero SYNONYMOUS_CODING
SBS Chr10 6141365 G-T Hetero INTERGENIC
SBS Chr11 10005132 G-T Homo INTERGENIC
SBS Chr11 10005133 G-A Homo INTERGENIC
SBS Chr12 12622192 G-A Homo INTERGENIC
SBS Chr12 16770790 A-G Homo INTERGENIC
SBS Chr12 24511834 G-A Hetero INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 13384554 13384555 1
Deletion Chr11 15597237 15597245 8
Deletion Chr1 18953228 18953234 6
Deletion Chr5 27371658 27371660 2
Deletion Chr2 28456502 28456509 7
Deletion Chr2 36013398 36013406 8
Deletion Chr3 36035152 36035154 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 33669529 33669532 2
Insertion Chr8 23382250 23382252 1
Insertion Chr10 18689207 18689211 3
Insertion Chr3 22175582 22175605 22 OsKitaake03g241635
Insertion Chr6 20641324 20641326 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 17774054 18543275 OsKitaake12g130800
Inversion Chr12 17774057 18543281 OsKitaake12g130800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10558273	G-T	Homo	INTERGENIC
SBS	Chr1	10558274	C-T	Homo	INTERGENIC
SBS	Chr2	25734313	A-T	Hetero	INTERGENIC
SBS	Chr2	34630380	C-G	Homo	UTR_5_PRIME
SBS	Chr3	615985	G-A	Hetero	INTRON
SBS	Chr4	3025978	G-A	Hetero	INTERGENIC
SBS	Chr4	21166467	C-T	Hetero	INTERGENIC
SBS	Chr4	36574566	T-A	Hetero	INTERGENIC
SBS	Chr6	5180260	G-T	Homo	INTERGENIC
SBS	Chr6	27761046	G-A	Hetero	INTRON
SBS	Chr7	9583738	A-C	Hetero	INTERGENIC
SBS	Chr7	13621230	G-T	Hetero	INTERGENIC
SBS	Chr7	16158684	A-G	Homo	INTERGENIC
SBS	Chr7	17562649	T-C	Homo	INTERGENIC
SBS	Chr7	27110654	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g253500
SBS	Chr8	22318371	C-T	Homo	INTERGENIC
SBS	Chr8	26999737	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g219400
SBS	Chr9	15275573	C-A	Hetero	INTERGENIC
SBS	Chr10	2314125	T-A	Hetero	SYNONYMOUS_CODING
SBS	Chr10	6141365	G-T	Hetero	INTERGENIC
SBS	Chr11	10005132	G-T	Homo	INTERGENIC
SBS	Chr11	10005133	G-A	Homo	INTERGENIC
SBS	Chr12	12622192	G-A	Homo	INTERGENIC
SBS	Chr12	16770790	A-G	Homo	INTERGENIC
SBS	Chr12	24511834	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	13384554	13384555	1
Deletion	Chr11	15597237	15597245	8
Deletion	Chr1	18953228	18953234	6
Deletion	Chr5	27371658	27371660	2
Deletion	Chr2	28456502	28456509	7
Deletion	Chr2	36013398	36013406	8
Deletion	Chr3	36035152	36035154	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	17774054	18543275	OsKitaake12g130800
Inversion	Chr12	17774057	18543281	OsKitaake12g130800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes