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Mutant Information

Mutant Name	FN2260-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2260-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 61

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9556834 C-T Homo INTERGENIC
SBS Chr1 26744734 T-A Hetero INTERGENIC
SBS Chr1 32287664 C-A Hetero INTERGENIC
SBS Chr1 37465118 G-A Hetero INTERGENIC
SBS Chr2 5387344 C-T Hetero UTR_3_PRIME
SBS Chr2 11319758 T-C Hetero INTRON
SBS Chr2 24862441 G-A Hetero INTERGENIC
SBS Chr2 28515962 G-A Hetero INTERGENIC
SBS Chr3 5663618 A-G Hetero INTERGENIC
SBS Chr3 8253215 C-T Hetero INTERGENIC
SBS Chr3 12851987 G-A Hetero INTERGENIC
SBS Chr3 17157786 C-T Homo INTERGENIC
SBS Chr3 24178580 G-A Hetero INTRON
SBS Chr4 17951117 G-A Hetero INTERGENIC
SBS Chr4 18707367 G-A Hetero INTERGENIC
SBS Chr4 26465260 C-G Hetero INTERGENIC
SBS Chr4 27145735 C-T Hetero INTERGENIC
SBS Chr4 27145736 C-T Hetero INTERGENIC
SBS Chr5 1581981 G-A Hetero INTERGENIC
SBS Chr5 18905198 T-A Hetero INTERGENIC
SBS Chr5 21749420 T-C Hetero INTERGENIC
SBS Chr6 7625774 G-A Hetero INTERGENIC
SBS Chr6 7727823 G-A Hetero INTERGENIC
SBS Chr6 15503515 C-A Hetero INTRON
SBS Chr6 19781888 G-T Homo INTERGENIC
SBS Chr6 23389909 C-T Hetero INTERGENIC
SBS Chr6 24893255 G-A Hetero INTERGENIC
SBS Chr7 296687 C-T Hetero INTERGENIC
SBS Chr7 2543298 C-G Hetero INTERGENIC
SBS Chr7 9449993 C-A Homo INTERGENIC
SBS Chr7 10790415 A-G Hetero INTERGENIC
SBS Chr7 21379657 T-C Hetero INTERGENIC
SBS Chr7 22417720 A-C Hetero INTERGENIC
SBS Chr7 23263860 C-T Homo INTERGENIC
SBS Chr8 6786957 C-A Homo INTERGENIC
SBS Chr8 6956220 C-A Hetero INTERGENIC
SBS Chr8 6956221 C-A Hetero INTERGENIC
SBS Chr8 7497381 G-T Homo INTERGENIC
SBS Chr8 13106673 G-A Hetero INTERGENIC
SBS Chr8 20899092 C-T Homo INTERGENIC
SBS Chr8 27192886 T-C Hetero UTR_5_PRIME
SBS Chr9 18343784 C-T Hetero SYNONYMOUS_CODING
SBS Chr10 4041434 A-G Hetero INTERGENIC
SBS Chr10 8952554 G-C Homo INTERGENIC
SBS Chr10 11879293 A-G Hetero INTRON
SBS Chr10 12026531 C-T Homo INTERGENIC
SBS Chr11 2364812 T-A Hetero INTERGENIC
SBS Chr11 8663852 G-T Hetero INTERGENIC
SBS Chr11 8699732 C-A Hetero INTRON
SBS Chr11 9147417 T-A Hetero INTERGENIC
SBS Chr11 9386710 C-G Hetero INTERGENIC
SBS Chr11 13918077 T-C Hetero INTERGENIC
SBS Chr11 18862615 C-T Hetero INTERGENIC
SBS Chr11 20466097 A-T Hetero INTERGENIC
SBS Chr11 25010837 C-A Hetero INTERGENIC
SBS Chr12 4040115 C-G Hetero INTRON
SBS Chr12 5505801 C-A Hetero INTERGENIC
SBS Chr12 6892721 C-T Hetero INTERGENIC
SBS Chr12 10994590 C-T Hetero INTERGENIC
SBS Chr12 21206498 T-A Hetero INTERGENIC
SBS Chr12 25860786 C-T Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 1776311 1776314 3
Deletion Chr1 3262717 3262731 14 OsKitaake01g042700
Deletion Chr6 5108961 5108977 16
Deletion Chr7 6301866 6301881 15
Deletion Chr6 8099857 8099865 8
Deletion Chr6 11481470 11481472 2
Deletion Chr6 14341022 14341025 3
Deletion Chr11 14616001 14635000 18999 OsKitaake11g121700
Deletion Chr8 17437874 17437878 4
Deletion Chr9 17959001 18058000 98999 14
Deletion Chr1 20471956 20471959 3
Deletion Chr6 20591001 20962000 370999 23
Deletion Chr11 20784341 20784347 6
Deletion Chr9 20942311 20942313 2
Deletion Chr5 21922598 21922600 2
Deletion Chr11 23855677 23855678 1
Deletion Chr4 24992292 24992294 2
Deletion Chr8 25460617 25460620 3
Deletion Chr4 27124039 27124043 4
Deletion Chr6 29449736 29449738 2

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 15685419 15685421 1
Insertion Chr2 29838865 29838868 2
Insertion Chr3 31502333 31502337 3
Insertion Chr4 10578166 10578168 1
Insertion Chr6 5682607 5682611 3
Insertion Chr12 26193262 26193265 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 34263568 34422618 2
Inversion Chr2 34263570 34422625 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 11541489 Chr2 31563731 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9556834	C-T	Homo	INTERGENIC
SBS	Chr1	26744734	T-A	Hetero	INTERGENIC
SBS	Chr1	32287664	C-A	Hetero	INTERGENIC
SBS	Chr1	37465118	G-A	Hetero	INTERGENIC
SBS	Chr2	5387344	C-T	Hetero	UTR_3_PRIME
SBS	Chr2	11319758	T-C	Hetero	INTRON
SBS	Chr2	24862441	G-A	Hetero	INTERGENIC
SBS	Chr2	28515962	G-A	Hetero	INTERGENIC
SBS	Chr3	5663618	A-G	Hetero	INTERGENIC
SBS	Chr3	8253215	C-T	Hetero	INTERGENIC
SBS	Chr3	12851987	G-A	Hetero	INTERGENIC
SBS	Chr3	17157786	C-T	Homo	INTERGENIC
SBS	Chr3	24178580	G-A	Hetero	INTRON
SBS	Chr4	17951117	G-A	Hetero	INTERGENIC
SBS	Chr4	18707367	G-A	Hetero	INTERGENIC
SBS	Chr4	26465260	C-G	Hetero	INTERGENIC
SBS	Chr4	27145735	C-T	Hetero	INTERGENIC
SBS	Chr4	27145736	C-T	Hetero	INTERGENIC
SBS	Chr5	1581981	G-A	Hetero	INTERGENIC
SBS	Chr5	18905198	T-A	Hetero	INTERGENIC
SBS	Chr5	21749420	T-C	Hetero	INTERGENIC
SBS	Chr6	7625774	G-A	Hetero	INTERGENIC
SBS	Chr6	7727823	G-A	Hetero	INTERGENIC
SBS	Chr6	15503515	C-A	Hetero	INTRON
SBS	Chr6	19781888	G-T	Homo	INTERGENIC
SBS	Chr6	23389909	C-T	Hetero	INTERGENIC
SBS	Chr6	24893255	G-A	Hetero	INTERGENIC
SBS	Chr7	296687	C-T	Hetero	INTERGENIC
SBS	Chr7	2543298	C-G	Hetero	INTERGENIC
SBS	Chr7	9449993	C-A	Homo	INTERGENIC
SBS	Chr7	10790415	A-G	Hetero	INTERGENIC
SBS	Chr7	21379657	T-C	Hetero	INTERGENIC
SBS	Chr7	22417720	A-C	Hetero	INTERGENIC
SBS	Chr7	23263860	C-T	Homo	INTERGENIC
SBS	Chr8	6786957	C-A	Homo	INTERGENIC
SBS	Chr8	6956220	C-A	Hetero	INTERGENIC
SBS	Chr8	6956221	C-A	Hetero	INTERGENIC
SBS	Chr8	7497381	G-T	Homo	INTERGENIC
SBS	Chr8	13106673	G-A	Hetero	INTERGENIC
SBS	Chr8	20899092	C-T	Homo	INTERGENIC
SBS	Chr8	27192886	T-C	Hetero	UTR_5_PRIME
SBS	Chr9	18343784	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr10	4041434	A-G	Hetero	INTERGENIC
SBS	Chr10	8952554	G-C	Homo	INTERGENIC
SBS	Chr10	11879293	A-G	Hetero	INTRON
SBS	Chr10	12026531	C-T	Homo	INTERGENIC
SBS	Chr11	2364812	T-A	Hetero	INTERGENIC
SBS	Chr11	8663852	G-T	Hetero	INTERGENIC
SBS	Chr11	8699732	C-A	Hetero	INTRON
SBS	Chr11	9147417	T-A	Hetero	INTERGENIC
SBS	Chr11	9386710	C-G	Hetero	INTERGENIC
SBS	Chr11	13918077	T-C	Hetero	INTERGENIC
SBS	Chr11	18862615	C-T	Hetero	INTERGENIC
SBS	Chr11	20466097	A-T	Hetero	INTERGENIC
SBS	Chr11	25010837	C-A	Hetero	INTERGENIC
SBS	Chr12	4040115	C-G	Hetero	INTRON
SBS	Chr12	5505801	C-A	Hetero	INTERGENIC
SBS	Chr12	6892721	C-T	Hetero	INTERGENIC
SBS	Chr12	10994590	C-T	Hetero	INTERGENIC
SBS	Chr12	21206498	T-A	Hetero	INTERGENIC
SBS	Chr12	25860786	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	1776311	1776314	3
Deletion	Chr1	3262717	3262731	14	OsKitaake01g042700
Deletion	Chr6	5108961	5108977	16
Deletion	Chr7	6301866	6301881	15
Deletion	Chr6	8099857	8099865	8
Deletion	Chr6	11481470	11481472	2
Deletion	Chr6	14341022	14341025	3
Deletion	Chr11	14616001	14635000	18999	OsKitaake11g121700
Deletion	Chr8	17437874	17437878	4
Deletion	Chr9	17959001	18058000	98999	14
Deletion	Chr1	20471956	20471959	3
Deletion	Chr6	20591001	20962000	370999	23
Deletion	Chr11	20784341	20784347	6
Deletion	Chr9	20942311	20942313	2
Deletion	Chr5	21922598	21922600	2
Deletion	Chr11	23855677	23855678	1
Deletion	Chr4	24992292	24992294	2
Deletion	Chr8	25460617	25460620	3
Deletion	Chr4	27124039	27124043	4
Deletion	Chr6	29449736	29449738	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	34263568	34422618	2
Inversion	Chr2	34263570	34422625	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes