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| Mutant Information |
|---|
| Mutant Name | FN2262-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2262-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 22
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 36246148 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 9351791 | G-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 22320189 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 18725974 | G-A | Hetero | INTRON | |
| SBS | Chr5 | 5404110 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 10879366 | G-T | Homo | INTRON | |
| SBS | Chr5 | 27571033 | T-G | Homo | INTERGENIC | |
| SBS | Chr7 | 5514192 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 27562873 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 2100799 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 6913057 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 12201592 | T-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr9 | 19698066 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 14132796 | T-C | Homo | UTR_3_PRIME | |
| SBS | Chr10 | 20558663 | T-C | Hetero | INTRON | |
| SBS | Chr11 | 750249 | T-A | Hetero | INTRON | |
| SBS | Chr11 | 10336241 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 12363764 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 18997447 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 18997448 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 6652256 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 15154273 | A-G | Hetero | INTERGENIC |
Deletions: 24
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 948902 | 948903 | 1 | |
| Deletion | Chr9 | 1521250 | 1521251 | 1 | |
| Deletion | Chr12 | 1917001 | 1939000 | 21999 | 4 |
| Deletion | Chr4 | 5137424 | 5137431 | 7 | |
| Deletion | Chr2 | 5390448 | 5390449 | 1 | |
| Deletion | Chr12 | 7389001 | 7425000 | 35999 | 3 |
| Deletion | Chr12 | 8653863 | 8653865 | 2 | |
| Deletion | Chr5 | 9403689 | 9403710 | 21 | |
| Deletion | Chr7 | 9753587 | 9753588 | 1 | |
| Deletion | Chr12 | 10171543 | 10171559 | 16 | |
| Deletion | Chr5 | 13577571 | 13577576 | 5 | |
| Deletion | Chr2 | 13724756 | 13724757 | 1 | |
| Deletion | Chr6 | 15179577 | 15179588 | 11 | |
| Deletion | Chr5 | 15236539 | 15236550 | 11 | |
| Deletion | Chr1 | 15278094 | 15278096 | 2 | |
| Deletion | Chr8 | 17874941 | 17874943 | 2 | |
| Deletion | Chr12 | 19097853 | 19097854 | 1 | |
| Deletion | Chr2 | 19187291 | 19187300 | 9 | OsKitaake02g187700 |
| Deletion | Chr3 | 20360001 | 20406000 | 45999 | OsKitaake03g230800 |
| Deletion | Chr3 | 20410001 | 20530000 | 119999 | 5 |
| Deletion | Chr8 | 25401588 | 25401589 | 1 | |
| Deletion | Chr11 | 28196861 | 28196864 | 3 | |
| Deletion | Chr4 | 33274012 | 33274013 | 1 | OsKitaake04g272000 |
| Deletion | Chr1 | 37268001 | 37325000 | 56999 | 7 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 22900859 | 22900865 | 5 | |
| Insertion | Chr2 | 36466125 | 36466128 | 2 | |
| Insertion | Chr3 | 30543723 | 30543726 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 39724482 | 40256367 | OsKitaake01g436700 |
| Inversion | Chr1 | 39724497 | 40256383 | OsKitaake01g436700 |