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Mutant Information

Mutant Name	FN2263-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2263-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 28459357 T-A Homo INTERGENIC
SBS Chr2 6287845 C-T Homo NON_SYNONYMOUS_CODING OsKitaake02g085000
SBS Chr2 15750271 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 21539940 C-A Hetero INTRON
SBS Chr3 23407663 T-A Hetero INTERGENIC
SBS Chr3 35726476 C-A Hetero UTR_3_PRIME
SBS Chr3 37579450 C-A Hetero INTERGENIC
SBS Chr4 6781733 C-A Homo INTERGENIC
SBS Chr4 17355764 C-T Homo INTERGENIC
SBS Chr5 5385542 C-G Hetero INTERGENIC
SBS Chr6 13799793 G-A Hetero INTERGENIC
SBS Chr7 1797928 T-C Hetero INTERGENIC
SBS Chr7 9050987 G-A Hetero INTERGENIC
SBS Chr7 12155431 G-A Hetero INTERGENIC
SBS Chr7 17382698 G-A Homo INTERGENIC
SBS Chr7 25656871 T-C Homo INTERGENIC
SBS Chr8 13450807 C-T Hetero INTERGENIC
SBS Chr9 124514 G-C Hetero INTRON
SBS Chr9 5462334 A-T Hetero INTERGENIC
SBS Chr10 2526947 A-G Hetero INTERGENIC
SBS Chr10 10014904 A-T Homo INTERGENIC
SBS Chr10 10751529 A-C Homo INTERGENIC
SBS Chr11 1527853 T-A Homo INTRON
SBS Chr11 6937719 A-T Homo INTERGENIC
SBS Chr11 15688659 T-G Homo INTERGENIC
SBS Chr11 22696736 C-T Hetero INTERGENIC
SBS Chr12 6687679 G-A Hetero INTRON
SBS Chr12 8864499 A-G Homo INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 100847 100849 2
Deletion Chr11 5265759 5265767 8
Deletion Chr11 5629687 5629693 6 OsKitaake11g069000
Deletion Chr11 14474001 15028000 553999 27
Deletion Chr5 15207733 15207749 16
Deletion Chr6 15630001 15659000 28999 OsKitaake06g152800
Deletion Chr5 16002768 16002874 106
Deletion Chr5 18606609 18606622 13
Deletion Chr6 19474979 19474984 5
Deletion Chr6 21544861 21544864 3
Deletion Chr8 21767890 21767895 5
Deletion Chr9 22339001 22352000 12999 OsKitaake09g202500
Deletion Chr1 23941024 23941040 16
Deletion Chr8 24279782 24279794 12
Deletion Chr8 29005791 29005805 14
Deletion Chr3 31563929 31563930 1 OsKitaake03g332600
Deletion Chr4 32206001 32251000 44999 8
Deletion Chr2 33767001 33892000 124999 19

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 4659135 4659138 2
Insertion Chr4 31393528 31393530 1
Insertion Chr5 7821326 7821331 4
Insertion Chr12 12107613 12107617 3
Insertion Chr12 17238951 17238955 3

Translocations: 8

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 1797807 Chr3 34871425
Translocation Chr7 1810151 Chr3 34871439
Translocation Chr8 11407020 Chr3 36850222
Translocation Chr8 11407603 Chr3 36850224
Translocation Chr8 11887267 Chr2 16457373
Translocation Chr8 11887581 Chr2 16457364
Translocation Chr11 14456210 Chr2 17226729 OsKitaake02g173600
Translocation Chr11 15024887 Chr2 17227123 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28459357	T-A	Homo	INTERGENIC
SBS	Chr2	6287845	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g085000
SBS	Chr2	15750271	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	21539940	C-A	Hetero	INTRON
SBS	Chr3	23407663	T-A	Hetero	INTERGENIC
SBS	Chr3	35726476	C-A	Hetero	UTR_3_PRIME
SBS	Chr3	37579450	C-A	Hetero	INTERGENIC
SBS	Chr4	6781733	C-A	Homo	INTERGENIC
SBS	Chr4	17355764	C-T	Homo	INTERGENIC
SBS	Chr5	5385542	C-G	Hetero	INTERGENIC
SBS	Chr6	13799793	G-A	Hetero	INTERGENIC
SBS	Chr7	1797928	T-C	Hetero	INTERGENIC
SBS	Chr7	9050987	G-A	Hetero	INTERGENIC
SBS	Chr7	12155431	G-A	Hetero	INTERGENIC
SBS	Chr7	17382698	G-A	Homo	INTERGENIC
SBS	Chr7	25656871	T-C	Homo	INTERGENIC
SBS	Chr8	13450807	C-T	Hetero	INTERGENIC
SBS	Chr9	124514	G-C	Hetero	INTRON
SBS	Chr9	5462334	A-T	Hetero	INTERGENIC
SBS	Chr10	2526947	A-G	Hetero	INTERGENIC
SBS	Chr10	10014904	A-T	Homo	INTERGENIC
SBS	Chr10	10751529	A-C	Homo	INTERGENIC
SBS	Chr11	1527853	T-A	Homo	INTRON
SBS	Chr11	6937719	A-T	Homo	INTERGENIC
SBS	Chr11	15688659	T-G	Homo	INTERGENIC
SBS	Chr11	22696736	C-T	Hetero	INTERGENIC
SBS	Chr12	6687679	G-A	Hetero	INTRON
SBS	Chr12	8864499	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	100847	100849	2
Deletion	Chr11	5265759	5265767	8
Deletion	Chr11	5629687	5629693	6	OsKitaake11g069000
Deletion	Chr11	14474001	15028000	553999	27
Deletion	Chr5	15207733	15207749	16
Deletion	Chr6	15630001	15659000	28999	OsKitaake06g152800
Deletion	Chr5	16002768	16002874	106
Deletion	Chr5	18606609	18606622	13
Deletion	Chr6	19474979	19474984	5
Deletion	Chr6	21544861	21544864	3
Deletion	Chr8	21767890	21767895	5
Deletion	Chr9	22339001	22352000	12999	OsKitaake09g202500
Deletion	Chr1	23941024	23941040	16
Deletion	Chr8	24279782	24279794	12
Deletion	Chr8	29005791	29005805	14
Deletion	Chr3	31563929	31563930	1	OsKitaake03g332600
Deletion	Chr4	32206001	32251000	44999	8
Deletion	Chr2	33767001	33892000	124999	19

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	1797807	Chr3	34871425
Translocation	Chr7	1810151	Chr3	34871439
Translocation	Chr8	11407020	Chr3	36850222
Translocation	Chr8	11407603	Chr3	36850224
Translocation	Chr8	11887267	Chr2	16457373
Translocation	Chr8	11887581	Chr2	16457364
Translocation	Chr11	14456210	Chr2	17226729	OsKitaake02g173600
Translocation	Chr11	15024887	Chr2	17227123	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes