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Mutant Information

Mutant Name	FN2264-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2264-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 20

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9770920 T-A Homo INTERGENIC
SBS Chr1 9770921 C-A Homo INTERGENIC
SBS Chr1 11357445 G-A Homo INTERGENIC
SBS Chr1 35925091 G-A Homo INTERGENIC
SBS Chr1 40839535 C-A Hetero INTERGENIC
SBS Chr2 14602142 T-C Homo INTERGENIC
SBS Chr2 36958223 C-G Hetero INTERGENIC
SBS Chr3 37588777 A-G Homo NON_SYNONYMOUS_CODING OsKitaake03g422100
SBS Chr4 9431190 A-G Homo INTERGENIC
SBS Chr4 36252355 T-G Hetero INTRON
SBS Chr5 3226416 A-T Hetero INTERGENIC
SBS Chr5 5162369 A-T Hetero INTERGENIC
SBS Chr5 23495623 C-T Homo INTERGENIC
SBS Chr5 24646284 C-T Hetero INTRON
SBS Chr7 9701979 G-A Homo INTERGENIC
SBS Chr9 1732842 G-A Hetero INTERGENIC
SBS Chr9 12421571 T-C Hetero INTERGENIC
SBS Chr9 14336729 C-T Homo INTERGENIC
SBS Chr10 13018385 C-T Hetero INTERGENIC
SBS Chr11 25703391 C-T Hetero INTRON

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 5070904 5070908 4
Deletion Chr11 5125001 5147000 21999 2
Deletion Chr8 12398998 12398999 1
Deletion Chr9 14359001 15220000 860999 99
Deletion Chr5 16168465 16168467 2
Deletion Chr6 29178001 29209000 30999 8
Deletion Chr6 29211001 29251000 39999 5
Deletion Chr6 30484001 30496000 11999 OsKitaake06g287100

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 25933910 25933915 4
Insertion Chr3 24114556 24114564 7
Insertion Chr4 28169899 28169901 1
Insertion Chr8 1396065 1396067 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9770920	T-A	Homo	INTERGENIC
SBS	Chr1	9770921	C-A	Homo	INTERGENIC
SBS	Chr1	11357445	G-A	Homo	INTERGENIC
SBS	Chr1	35925091	G-A	Homo	INTERGENIC
SBS	Chr1	40839535	C-A	Hetero	INTERGENIC
SBS	Chr2	14602142	T-C	Homo	INTERGENIC
SBS	Chr2	36958223	C-G	Hetero	INTERGENIC
SBS	Chr3	37588777	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g422100
SBS	Chr4	9431190	A-G	Homo	INTERGENIC
SBS	Chr4	36252355	T-G	Hetero	INTRON
SBS	Chr5	3226416	A-T	Hetero	INTERGENIC
SBS	Chr5	5162369	A-T	Hetero	INTERGENIC
SBS	Chr5	23495623	C-T	Homo	INTERGENIC
SBS	Chr5	24646284	C-T	Hetero	INTRON
SBS	Chr7	9701979	G-A	Homo	INTERGENIC
SBS	Chr9	1732842	G-A	Hetero	INTERGENIC
SBS	Chr9	12421571	T-C	Hetero	INTERGENIC
SBS	Chr9	14336729	C-T	Homo	INTERGENIC
SBS	Chr10	13018385	C-T	Hetero	INTERGENIC
SBS	Chr11	25703391	C-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	5070904	5070908	4
Deletion	Chr11	5125001	5147000	21999	2
Deletion	Chr8	12398998	12398999	1
Deletion	Chr9	14359001	15220000	860999	99
Deletion	Chr5	16168465	16168467	2
Deletion	Chr6	29178001	29209000	30999	8
Deletion	Chr6	29211001	29251000	39999	5
Deletion	Chr6	30484001	30496000	11999	OsKitaake06g287100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes