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Mutant Information

Mutant Name	FN2265-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2265-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 50

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10247927 G-A Hetero INTERGENIC
SBS Chr1 11152956 G-A Homo INTRON
SBS Chr1 17301828 G-A Hetero INTERGENIC
SBS Chr1 17479792 G-A Homo INTERGENIC
SBS Chr1 17479794 T-C Homo INTERGENIC
SBS Chr1 27913651 C-A Hetero INTRON
SBS Chr1 36177215 T-A Homo INTRON
SBS Chr2 26882838 C-T Hetero INTERGENIC
SBS Chr2 27525691 A-T Hetero INTERGENIC
SBS Chr3 509883 G-T Hetero UTR_3_PRIME
SBS Chr3 16008746 G-A Hetero INTERGENIC
SBS Chr3 31480334 C-T Hetero INTERGENIC
SBS Chr4 11353627 C-T Hetero INTERGENIC
SBS Chr4 16331405 C-T Hetero INTERGENIC
SBS Chr4 17456867 T-A Hetero UTR_5_PRIME
SBS Chr4 28954535 C-T Hetero INTERGENIC
SBS Chr5 1003651 G-T Hetero INTRON
SBS Chr5 4484225 G-A Hetero INTERGENIC
SBS Chr5 5320105 T-C Hetero INTERGENIC
SBS Chr5 7395084 A-T Hetero INTERGENIC
SBS Chr5 14219610 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g109000
SBS Chr5 18138743 G-T Hetero INTERGENIC
SBS Chr5 23143374 A-C Hetero INTERGENIC
SBS Chr5 23759747 C-A Hetero INTERGENIC
SBS Chr5 24126343 G-A Hetero INTERGENIC
SBS Chr6 8818165 A-T Hetero INTERGENIC
SBS Chr6 18681883 T-C Hetero INTERGENIC
SBS Chr6 25050419 G-C Hetero INTRON
SBS Chr7 7067812 A-T Hetero INTERGENIC
SBS Chr7 9997485 C-G Hetero INTERGENIC
SBS Chr7 13678423 C-T Hetero INTERGENIC
SBS Chr7 14737032 G-A Hetero INTERGENIC
SBS Chr7 26525740 A-G Hetero SYNONYMOUS_CODING
SBS Chr8 1065314 T-C Homo INTERGENIC
SBS Chr8 9431644 A-G Homo INTERGENIC
SBS Chr8 22678308 C-T Hetero INTERGENIC
SBS Chr8 22678309 C-T Hetero INTERGENIC
SBS Chr9 1617478 G-C Hetero INTERGENIC
SBS Chr9 2392447 C-G Hetero INTERGENIC
SBS Chr9 6519595 G-A Hetero INTERGENIC
SBS Chr9 9431863 G-A Hetero INTERGENIC
SBS Chr9 12620978 G-A Homo INTERGENIC
SBS Chr10 71603 C-A Hetero INTERGENIC
SBS Chr10 17500079 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g119300
SBS Chr11 8493393 T-C Hetero INTERGENIC
SBS Chr11 15888952 A-C Hetero INTRON
SBS Chr11 19126433 A-G Hetero INTERGENIC
SBS Chr11 26357877 C-T Hetero INTERGENIC
SBS Chr12 3561644 A-G Hetero INTERGENIC
SBS Chr12 20482796 C-A Hetero INTERGENIC

Deletions: 27

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 778717 778719 2
Deletion Chr10 3031250 3031254 4 OsKitaake10g024700
Deletion Chr1 7947363 7947365 2
Deletion Chr4 9233973 9233976 3
Deletion Chr2 11519226 11519228 2
Deletion Chr2 12185955 12185958 3
Deletion Chr2 12247608 12247621 13
Deletion Chr3 15050695 15050697 2
Deletion Chr5 15057397 15057401 4
Deletion Chr4 16116264 16116274 10
Deletion Chr4 16280988 16280989 1
Deletion Chr2 16987803 16987812 9
Deletion Chr1 18093450 18093454 4
Deletion Chr11 18876876 18876878 2
Deletion Chr12 20236370 20236383 13
Deletion Chr6 20644413 20644415 2
Deletion Chr10 20934102 20934104 2
Deletion Chr6 21952819 21952833 14
Deletion Chr11 22807641 22807642 1 OsKitaake11g180800
Deletion Chr11 23434185 23434186 1 OsKitaake11g186700
Deletion Chr5 23960185 23960186 1 OsKitaake05g211600
Deletion Chr8 24316134 24316144 10
Deletion Chr1 25383140 25383143 3
Deletion Chr5 26745510 26745512 2
Deletion Chr7 26800047 26800048 1
Deletion Chr11 28862316 28862317 1 OsKitaake11g236300
Deletion Chr3 33018042 33018044 2

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 24639318 24639321 2
Insertion Chr5 8408932 8408934 1
Insertion Chr6 23920093 23920097 3
Insertion Chr8 20109562 20109565 2
Insertion Chr10 20794027 20794030 2
Insertion Chr12 10387922 10387925 2
Insertion Chr12 19582289 19582293 3
Insertion Chr12 24664892 24664895 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 5251464 5503948 OsKitaake02g075800
Inversion Chr7 12570001 13060273 OsKitaake07g112300
Inversion Chr7 13072900 13485977

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10247927	G-A	Hetero	INTERGENIC
SBS	Chr1	11152956	G-A	Homo	INTRON
SBS	Chr1	17301828	G-A	Hetero	INTERGENIC
SBS	Chr1	17479792	G-A	Homo	INTERGENIC
SBS	Chr1	17479794	T-C	Homo	INTERGENIC
SBS	Chr1	27913651	C-A	Hetero	INTRON
SBS	Chr1	36177215	T-A	Homo	INTRON
SBS	Chr2	26882838	C-T	Hetero	INTERGENIC
SBS	Chr2	27525691	A-T	Hetero	INTERGENIC
SBS	Chr3	509883	G-T	Hetero	UTR_3_PRIME
SBS	Chr3	16008746	G-A	Hetero	INTERGENIC
SBS	Chr3	31480334	C-T	Hetero	INTERGENIC
SBS	Chr4	11353627	C-T	Hetero	INTERGENIC
SBS	Chr4	16331405	C-T	Hetero	INTERGENIC
SBS	Chr4	17456867	T-A	Hetero	UTR_5_PRIME
SBS	Chr4	28954535	C-T	Hetero	INTERGENIC
SBS	Chr5	1003651	G-T	Hetero	INTRON
SBS	Chr5	4484225	G-A	Hetero	INTERGENIC
SBS	Chr5	5320105	T-C	Hetero	INTERGENIC
SBS	Chr5	7395084	A-T	Hetero	INTERGENIC
SBS	Chr5	14219610	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g109000
SBS	Chr5	18138743	G-T	Hetero	INTERGENIC
SBS	Chr5	23143374	A-C	Hetero	INTERGENIC
SBS	Chr5	23759747	C-A	Hetero	INTERGENIC
SBS	Chr5	24126343	G-A	Hetero	INTERGENIC
SBS	Chr6	8818165	A-T	Hetero	INTERGENIC
SBS	Chr6	18681883	T-C	Hetero	INTERGENIC
SBS	Chr6	25050419	G-C	Hetero	INTRON
SBS	Chr7	7067812	A-T	Hetero	INTERGENIC
SBS	Chr7	9997485	C-G	Hetero	INTERGENIC
SBS	Chr7	13678423	C-T	Hetero	INTERGENIC
SBS	Chr7	14737032	G-A	Hetero	INTERGENIC
SBS	Chr7	26525740	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr8	1065314	T-C	Homo	INTERGENIC
SBS	Chr8	9431644	A-G	Homo	INTERGENIC
SBS	Chr8	22678308	C-T	Hetero	INTERGENIC
SBS	Chr8	22678309	C-T	Hetero	INTERGENIC
SBS	Chr9	1617478	G-C	Hetero	INTERGENIC
SBS	Chr9	2392447	C-G	Hetero	INTERGENIC
SBS	Chr9	6519595	G-A	Hetero	INTERGENIC
SBS	Chr9	9431863	G-A	Hetero	INTERGENIC
SBS	Chr9	12620978	G-A	Homo	INTERGENIC
SBS	Chr10	71603	C-A	Hetero	INTERGENIC
SBS	Chr10	17500079	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g119300
SBS	Chr11	8493393	T-C	Hetero	INTERGENIC
SBS	Chr11	15888952	A-C	Hetero	INTRON
SBS	Chr11	19126433	A-G	Hetero	INTERGENIC
SBS	Chr11	26357877	C-T	Hetero	INTERGENIC
SBS	Chr12	3561644	A-G	Hetero	INTERGENIC
SBS	Chr12	20482796	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	778717	778719	2
Deletion	Chr10	3031250	3031254	4	OsKitaake10g024700
Deletion	Chr1	7947363	7947365	2
Deletion	Chr4	9233973	9233976	3
Deletion	Chr2	11519226	11519228	2
Deletion	Chr2	12185955	12185958	3
Deletion	Chr2	12247608	12247621	13
Deletion	Chr3	15050695	15050697	2
Deletion	Chr5	15057397	15057401	4
Deletion	Chr4	16116264	16116274	10
Deletion	Chr4	16280988	16280989	1
Deletion	Chr2	16987803	16987812	9
Deletion	Chr1	18093450	18093454	4
Deletion	Chr11	18876876	18876878	2
Deletion	Chr12	20236370	20236383	13
Deletion	Chr6	20644413	20644415	2
Deletion	Chr10	20934102	20934104	2
Deletion	Chr6	21952819	21952833	14
Deletion	Chr11	22807641	22807642	1	OsKitaake11g180800
Deletion	Chr11	23434185	23434186	1	OsKitaake11g186700
Deletion	Chr5	23960185	23960186	1	OsKitaake05g211600
Deletion	Chr8	24316134	24316144	10
Deletion	Chr1	25383140	25383143	3
Deletion	Chr5	26745510	26745512	2
Deletion	Chr7	26800047	26800048	1
Deletion	Chr11	28862316	28862317	1	OsKitaake11g236300
Deletion	Chr3	33018042	33018044	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	5251464	5503948	OsKitaake02g075800
Inversion	Chr7	12570001	13060273	OsKitaake07g112300
Inversion	Chr7	13072900	13485977

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes