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Mutant Information

Mutant Name	FN2266-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2266-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4200354 C-T Homo NON_SYNONYMOUS_CODING OsKitaake01g056200
SBS Chr1 4777236 T-C Homo INTRON
SBS Chr1 35658827 G-A Hetero INTERGENIC
SBS Chr2 32119018 G-A Hetero INTRON
SBS Chr2 32541102 G-A Hetero INTERGENIC
SBS Chr2 35619353 A-C Homo INTERGENIC
SBS Chr3 1522439 A-T Homo INTERGENIC
SBS Chr3 10683710 T-G Homo INTRON
SBS Chr3 14324267 T-C Hetero INTERGENIC
SBS Chr3 15702223 C-T Homo INTERGENIC
SBS Chr4 686025 T-C Homo NON_SYNONYMOUS_CODING OsKitaake04g005600
SBS Chr4 11300263 T-C Homo INTERGENIC
SBS Chr4 16198647 G-C Homo INTRON
SBS Chr5 6611792 A-T Homo INTERGENIC
SBS Chr5 15923888 T-A Hetero INTERGENIC
SBS Chr6 12266982 A-G Hetero INTRON
SBS Chr6 15389890 G-A Hetero INTERGENIC
SBS Chr7 7333144 A-C Hetero INTERGENIC
SBS Chr8 4728565 G-A Hetero INTERGENIC
SBS Chr8 5085919 T-C Hetero INTERGENIC
SBS Chr8 10515089 T-A Hetero INTERGENIC
SBS Chr8 10515090 T-A Hetero INTERGENIC
SBS Chr8 14156979 A-G Hetero INTRON
SBS Chr8 23392480 C-T Homo INTRON
SBS Chr8 26606706 A-G Homo INTERGENIC
SBS Chr8 28522324 A-T Homo NON_SYNONYMOUS_CODING OsKitaake08g242300
SBS Chr9 7219590 C-T Hetero INTERGENIC
SBS Chr9 10642433 C-T Hetero INTERGENIC
SBS Chr10 996389 C-T Homo INTERGENIC
SBS Chr10 5654359 A-G Hetero INTERGENIC
SBS Chr12 1882132 G-A Hetero INTERGENIC
SBS Chr12 10335333 G-C Homo INTERGENIC
SBS Chr12 11478829 T-A Homo INTERGENIC
SBS Chr12 26867060 C-T Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 1000429 1000432 3
Deletion Chr10 1052001 1186000 133999 13
Deletion Chr9 1139790 1139791 1
Deletion Chr4 6117682 6117683 1
Deletion Chr7 8715954 8715955 1
Deletion Chr2 10266413 10266415 2
Deletion Chr6 10541001 10560000 18999
Deletion Chr3 10685771 10685777 6
Deletion Chr3 11243143 11243144 1
Deletion Chr1 12048001 12078000 29999 OsKitaake01g147600
Deletion Chr3 14179001 14193000 13999 2
Deletion Chr2 20813354 20813358 4
Deletion Chr3 24214145 24214158 13
Deletion Chr1 36421001 36433000 11999 2

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 29427008 29427011 2
Insertion Chr5 1341481 1341484 2
Insertion Chr6 15440630 15440633 2
Insertion Chr7 10622903 10622906 2
Insertion Chr9 14532782 14532785 2
Insertion Chr11 14625648 14625652 3
Insertion Chr8 22823116 22823118 1

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 1000069 1045983
Inversion Chr10 1000088 1185450
Inversion Chr1 10325612 11017787
Inversion Chr6 10560796 10582664 OsKitaake06g119000
Inversion Chr1 36421621 37376248 OsKitaake01g399200
Inversion Chr1 36433324 37376249 OsKitaake01g399200

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 2190435 Chr1 41895189 OsKitaake01g458800
Translocation Chr9 9214523 Chr1 12077685 OsKitaake09g055000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4200354	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g056200
SBS	Chr1	4777236	T-C	Homo	INTRON
SBS	Chr1	35658827	G-A	Hetero	INTERGENIC
SBS	Chr2	32119018	G-A	Hetero	INTRON
SBS	Chr2	32541102	G-A	Hetero	INTERGENIC
SBS	Chr2	35619353	A-C	Homo	INTERGENIC
SBS	Chr3	1522439	A-T	Homo	INTERGENIC
SBS	Chr3	10683710	T-G	Homo	INTRON
SBS	Chr3	14324267	T-C	Hetero	INTERGENIC
SBS	Chr3	15702223	C-T	Homo	INTERGENIC
SBS	Chr4	686025	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g005600
SBS	Chr4	11300263	T-C	Homo	INTERGENIC
SBS	Chr4	16198647	G-C	Homo	INTRON
SBS	Chr5	6611792	A-T	Homo	INTERGENIC
SBS	Chr5	15923888	T-A	Hetero	INTERGENIC
SBS	Chr6	12266982	A-G	Hetero	INTRON
SBS	Chr6	15389890	G-A	Hetero	INTERGENIC
SBS	Chr7	7333144	A-C	Hetero	INTERGENIC
SBS	Chr8	4728565	G-A	Hetero	INTERGENIC
SBS	Chr8	5085919	T-C	Hetero	INTERGENIC
SBS	Chr8	10515089	T-A	Hetero	INTERGENIC
SBS	Chr8	10515090	T-A	Hetero	INTERGENIC
SBS	Chr8	14156979	A-G	Hetero	INTRON
SBS	Chr8	23392480	C-T	Homo	INTRON
SBS	Chr8	26606706	A-G	Homo	INTERGENIC
SBS	Chr8	28522324	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g242300
SBS	Chr9	7219590	C-T	Hetero	INTERGENIC
SBS	Chr9	10642433	C-T	Hetero	INTERGENIC
SBS	Chr10	996389	C-T	Homo	INTERGENIC
SBS	Chr10	5654359	A-G	Hetero	INTERGENIC
SBS	Chr12	1882132	G-A	Hetero	INTERGENIC
SBS	Chr12	10335333	G-C	Homo	INTERGENIC
SBS	Chr12	11478829	T-A	Homo	INTERGENIC
SBS	Chr12	26867060	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	1000429	1000432	3
Deletion	Chr10	1052001	1186000	133999	13
Deletion	Chr9	1139790	1139791	1
Deletion	Chr4	6117682	6117683	1
Deletion	Chr7	8715954	8715955	1
Deletion	Chr2	10266413	10266415	2
Deletion	Chr6	10541001	10560000	18999
Deletion	Chr3	10685771	10685777	6
Deletion	Chr3	11243143	11243144	1
Deletion	Chr1	12048001	12078000	29999	OsKitaake01g147600
Deletion	Chr3	14179001	14193000	13999	2
Deletion	Chr2	20813354	20813358	4
Deletion	Chr3	24214145	24214158	13
Deletion	Chr1	36421001	36433000	11999	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	1000069	1045983
Inversion	Chr10	1000088	1185450
Inversion	Chr1	10325612	11017787
Inversion	Chr6	10560796	10582664	OsKitaake06g119000
Inversion	Chr1	36421621	37376248	OsKitaake01g399200
Inversion	Chr1	36433324	37376249	OsKitaake01g399200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes