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Mutant Information

Mutant Name	FN2267-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2267-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2709863 C-T Hetero INTERGENIC
SBS Chr1 7234071 A-T Hetero INTRON
SBS Chr1 13355076 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g156200
SBS Chr1 22458568 C-T Hetero INTRON
SBS Chr1 29526700 G-C Hetero INTERGENIC
SBS Chr2 4725264 C-T Homo INTRON
SBS Chr2 9964018 C-A Homo INTERGENIC
SBS Chr2 11006716 T-A Homo INTERGENIC
SBS Chr3 2078105 T-C Homo INTERGENIC
SBS Chr3 16837364 T-G Homo INTERGENIC
SBS Chr3 20286732 G-A Hetero INTERGENIC
SBS Chr3 24397753 G-A Hetero INTERGENIC
SBS Chr3 26731422 C-T Hetero INTERGENIC
SBS Chr3 26731423 G-T Hetero INTERGENIC
SBS Chr3 29228847 C-T Hetero INTRON
SBS Chr3 35535024 C-G Hetero UTR_3_PRIME
SBS Chr4 6058636 A-T Hetero INTERGENIC
SBS Chr4 17051706 C-A Hetero INTERGENIC
SBS Chr4 17123016 T-C Hetero INTRON
SBS Chr5 25645746 T-C Hetero UTR_3_PRIME
SBS Chr6 3783932 T-C Hetero INTRON
SBS Chr6 9631829 T-G Hetero INTRON
SBS Chr6 9932841 C-T Hetero INTERGENIC
SBS Chr6 15118525 T-A Hetero INTERGENIC
SBS Chr6 15136596 C-T Homo INTERGENIC
SBS Chr6 18243616 G-A Hetero UTR_3_PRIME
SBS Chr6 26640674 T-G Hetero INTERGENIC
SBS Chr7 2853521 G-A Hetero INTERGENIC
SBS Chr7 11732733 G-A Hetero INTERGENIC
SBS Chr7 12750467 T-C Hetero INTERGENIC
SBS Chr7 14190362 C-T Hetero INTERGENIC
SBS Chr8 1467482 C-T Homo INTERGENIC
SBS Chr8 11451737 C-A Hetero INTERGENIC
SBS Chr9 3454469 G-A Hetero INTERGENIC
SBS Chr9 3818323 G-A Hetero INTERGENIC
SBS Chr9 4970234 C-G Hetero INTERGENIC
SBS Chr9 11313323 A-C Hetero INTERGENIC
SBS Chr11 432063 C-T Hetero INTERGENIC
SBS Chr11 741148 T-G Homo INTERGENIC
SBS Chr11 3997603 A-T Homo INTERGENIC
SBS Chr11 28214382 T-C Hetero INTERGENIC
SBS Chr12 7053198 C-T Hetero UTR_3_PRIME
SBS Chr12 9144612 G-A Hetero INTERGENIC
SBS Chr12 12702003 T-A Hetero INTERGENIC
SBS Chr12 16026999 G-T Hetero INTERGENIC
SBS Chr12 19719992 A-T Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1927702 1927703 1 OsKitaake06g024000
Deletion Chr2 7243002 7243006 4
Deletion Chr2 8405063 8405078 15
Deletion Chr11 13723210 13723211 1
Deletion Chr7 15371015 15371023 8
Deletion Chr1 18014635 18014720 85
Deletion Chr1 23724558 23724560 2
Deletion Chr4 33684001 33784000 99999 12

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 1349687 1349690 2
Insertion Chr4 3416809 3416812 2
Insertion Chr4 34853806 34853808 1 OsKitaake04g291600
Insertion Chr8 16004741 16004745 3
Insertion Chr8 26682322 26682325 2
Insertion Chr12 8134070 8134075 4

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 19159143 19546583 OsKitaake06g173100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2709863	C-T	Hetero	INTERGENIC
SBS	Chr1	7234071	A-T	Hetero	INTRON
SBS	Chr1	13355076	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g156200
SBS	Chr1	22458568	C-T	Hetero	INTRON
SBS	Chr1	29526700	G-C	Hetero	INTERGENIC
SBS	Chr2	4725264	C-T	Homo	INTRON
SBS	Chr2	9964018	C-A	Homo	INTERGENIC
SBS	Chr2	11006716	T-A	Homo	INTERGENIC
SBS	Chr3	2078105	T-C	Homo	INTERGENIC
SBS	Chr3	16837364	T-G	Homo	INTERGENIC
SBS	Chr3	20286732	G-A	Hetero	INTERGENIC
SBS	Chr3	24397753	G-A	Hetero	INTERGENIC
SBS	Chr3	26731422	C-T	Hetero	INTERGENIC
SBS	Chr3	26731423	G-T	Hetero	INTERGENIC
SBS	Chr3	29228847	C-T	Hetero	INTRON
SBS	Chr3	35535024	C-G	Hetero	UTR_3_PRIME
SBS	Chr4	6058636	A-T	Hetero	INTERGENIC
SBS	Chr4	17051706	C-A	Hetero	INTERGENIC
SBS	Chr4	17123016	T-C	Hetero	INTRON
SBS	Chr5	25645746	T-C	Hetero	UTR_3_PRIME
SBS	Chr6	3783932	T-C	Hetero	INTRON
SBS	Chr6	9631829	T-G	Hetero	INTRON
SBS	Chr6	9932841	C-T	Hetero	INTERGENIC
SBS	Chr6	15118525	T-A	Hetero	INTERGENIC
SBS	Chr6	15136596	C-T	Homo	INTERGENIC
SBS	Chr6	18243616	G-A	Hetero	UTR_3_PRIME
SBS	Chr6	26640674	T-G	Hetero	INTERGENIC
SBS	Chr7	2853521	G-A	Hetero	INTERGENIC
SBS	Chr7	11732733	G-A	Hetero	INTERGENIC
SBS	Chr7	12750467	T-C	Hetero	INTERGENIC
SBS	Chr7	14190362	C-T	Hetero	INTERGENIC
SBS	Chr8	1467482	C-T	Homo	INTERGENIC
SBS	Chr8	11451737	C-A	Hetero	INTERGENIC
SBS	Chr9	3454469	G-A	Hetero	INTERGENIC
SBS	Chr9	3818323	G-A	Hetero	INTERGENIC
SBS	Chr9	4970234	C-G	Hetero	INTERGENIC
SBS	Chr9	11313323	A-C	Hetero	INTERGENIC
SBS	Chr11	432063	C-T	Hetero	INTERGENIC
SBS	Chr11	741148	T-G	Homo	INTERGENIC
SBS	Chr11	3997603	A-T	Homo	INTERGENIC
SBS	Chr11	28214382	T-C	Hetero	INTERGENIC
SBS	Chr12	7053198	C-T	Hetero	UTR_3_PRIME
SBS	Chr12	9144612	G-A	Hetero	INTERGENIC
SBS	Chr12	12702003	T-A	Hetero	INTERGENIC
SBS	Chr12	16026999	G-T	Hetero	INTERGENIC
SBS	Chr12	19719992	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1927702	1927703	1	OsKitaake06g024000
Deletion	Chr2	7243002	7243006	4
Deletion	Chr2	8405063	8405078	15
Deletion	Chr11	13723210	13723211	1
Deletion	Chr7	15371015	15371023	8
Deletion	Chr1	18014635	18014720	85
Deletion	Chr1	23724558	23724560	2
Deletion	Chr4	33684001	33784000	99999	12

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	19159143	19546583	OsKitaake06g173100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes