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Mutant Information

Mutant Name	FN2269-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2269-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 26849868 A-G Hetero INTERGENIC
SBS Chr1 28451740 A-G Hetero INTRON
SBS Chr2 336039 C-T Hetero SYNONYMOUS_CODING
SBS Chr2 3914710 G-A Hetero INTERGENIC
SBS Chr3 8584383 C-A Homo INTERGENIC
SBS Chr3 17917420 A-G Hetero INTERGENIC
SBS Chr3 34210178 A-T Homo INTERGENIC
SBS Chr4 7504620 C-T Hetero INTERGENIC
SBS Chr4 14810381 T-C Hetero INTERGENIC
SBS Chr4 19749225 A-G Homo INTERGENIC
SBS Chr4 22587680 C-G Hetero INTERGENIC
SBS Chr4 23380782 G-A Hetero INTERGENIC
SBS Chr4 25873465 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g180900
SBS Chr5 22586291 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g185500
SBS Chr5 30133113 A-C Hetero INTERGENIC
SBS Chr6 10154271 C-T Hetero INTERGENIC
SBS Chr6 20232442 G-A Homo INTERGENIC
SBS Chr7 1701296 G-A Hetero INTRON
SBS Chr7 6233756 C-G Hetero INTERGENIC
SBS Chr7 17281997 C-T Hetero INTERGENIC
SBS Chr7 17434123 G-C Hetero INTERGENIC
SBS Chr7 24124075 C-A Hetero INTERGENIC
SBS Chr7 25748019 A-G Homo INTERGENIC
SBS Chr9 19965968 T-A Hetero UTR_3_PRIME
SBS Chr10 2921210 C-G Homo INTERGENIC
SBS Chr10 3974985 T-C Homo INTRON
SBS Chr10 17415076 A-T Homo INTERGENIC
SBS Chr10 23454723 G-A Hetero INTERGENIC
SBS Chr11 203690 T-A Hetero UTR_5_PRIME
SBS Chr11 7431957 G-T Homo INTERGENIC
SBS Chr11 11391310 C-A Homo INTERGENIC
SBS Chr12 4184043 G-T Homo STOP_GAINED OsKitaake12g057300

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 125001 149000 23999
Deletion Chr9 190102 190115 13
Deletion Chr3 1555384 1555385 1
Deletion Chr2 3018001 3060000 41999 8
Deletion Chr5 4422256 4422266 10
Deletion Chr8 4502917 4502918 1 OsKitaake08g050800
Deletion Chr7 4862347 4862355 8
Deletion Chr6 5108704 5108708 4
Deletion Chr12 6212647 6212656 9
Deletion Chr12 8825001 8836000 10999 2
Deletion Chr1 9554418 9554428 10
Deletion Chr2 10155284 10155285 1 OsKitaake02g121901
Deletion Chr12 10232954 10232966 12
Deletion Chr7 15032901 15032908 7
Deletion Chr7 16898001 16979000 80999 5
Deletion Chr5 18841217 18841218 1
Deletion Chr3 21197604 21197614 10
Deletion Chr3 26864916 26864920 4

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 9520563 9520566 2
Insertion Chr2 24311421 24311423 1 OsKitaake02g240900
Insertion Chr4 33362485 33362489 3
Insertion Chr8 20549870 20549873 2
Insertion Chr6 2211286 2211291 4

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 122904 146358
Inversion Chr6 193514 305183

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 11491473 Chr7 16898982
Translocation Chr4 17919515 Chr1 43151952
Translocation Chr4 17919557 Chr1 43152106

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26849868	A-G	Hetero	INTERGENIC
SBS	Chr1	28451740	A-G	Hetero	INTRON
SBS	Chr2	336039	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	3914710	G-A	Hetero	INTERGENIC
SBS	Chr3	8584383	C-A	Homo	INTERGENIC
SBS	Chr3	17917420	A-G	Hetero	INTERGENIC
SBS	Chr3	34210178	A-T	Homo	INTERGENIC
SBS	Chr4	7504620	C-T	Hetero	INTERGENIC
SBS	Chr4	14810381	T-C	Hetero	INTERGENIC
SBS	Chr4	19749225	A-G	Homo	INTERGENIC
SBS	Chr4	22587680	C-G	Hetero	INTERGENIC
SBS	Chr4	23380782	G-A	Hetero	INTERGENIC
SBS	Chr4	25873465	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g180900
SBS	Chr5	22586291	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g185500
SBS	Chr5	30133113	A-C	Hetero	INTERGENIC
SBS	Chr6	10154271	C-T	Hetero	INTERGENIC
SBS	Chr6	20232442	G-A	Homo	INTERGENIC
SBS	Chr7	1701296	G-A	Hetero	INTRON
SBS	Chr7	6233756	C-G	Hetero	INTERGENIC
SBS	Chr7	17281997	C-T	Hetero	INTERGENIC
SBS	Chr7	17434123	G-C	Hetero	INTERGENIC
SBS	Chr7	24124075	C-A	Hetero	INTERGENIC
SBS	Chr7	25748019	A-G	Homo	INTERGENIC
SBS	Chr9	19965968	T-A	Hetero	UTR_3_PRIME
SBS	Chr10	2921210	C-G	Homo	INTERGENIC
SBS	Chr10	3974985	T-C	Homo	INTRON
SBS	Chr10	17415076	A-T	Homo	INTERGENIC
SBS	Chr10	23454723	G-A	Hetero	INTERGENIC
SBS	Chr11	203690	T-A	Hetero	UTR_5_PRIME
SBS	Chr11	7431957	G-T	Homo	INTERGENIC
SBS	Chr11	11391310	C-A	Homo	INTERGENIC
SBS	Chr12	4184043	G-T	Homo	STOP_GAINED	OsKitaake12g057300

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	125001	149000	23999
Deletion	Chr9	190102	190115	13
Deletion	Chr3	1555384	1555385	1
Deletion	Chr2	3018001	3060000	41999	8
Deletion	Chr5	4422256	4422266	10
Deletion	Chr8	4502917	4502918	1	OsKitaake08g050800
Deletion	Chr7	4862347	4862355	8
Deletion	Chr6	5108704	5108708	4
Deletion	Chr12	6212647	6212656	9
Deletion	Chr12	8825001	8836000	10999	2
Deletion	Chr1	9554418	9554428	10
Deletion	Chr2	10155284	10155285	1	OsKitaake02g121901
Deletion	Chr12	10232954	10232966	12
Deletion	Chr7	15032901	15032908	7
Deletion	Chr7	16898001	16979000	80999	5
Deletion	Chr5	18841217	18841218	1
Deletion	Chr3	21197604	21197614	10
Deletion	Chr3	26864916	26864920	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	122904	146358
Inversion	Chr6	193514	305183

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes