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Mutant Information

Mutant Name	FN2271-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2271-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 18847254 G-A Hetero INTERGENIC
SBS Chr1 23749922 T-G Hetero INTERGENIC
SBS Chr1 23749924 G-A Hetero INTERGENIC
SBS Chr1 25516039 T-C Hetero INTERGENIC
SBS Chr1 29889083 G-A Hetero INTERGENIC
SBS Chr2 16478282 G-T Hetero UTR_5_PRIME
SBS Chr2 29539978 C-T Hetero INTERGENIC
SBS Chr2 30939453 T-C Hetero UTR_3_PRIME
SBS Chr2 31400239 T-A Hetero INTERGENIC
SBS Chr3 5117694 C-T Homo UTR_5_PRIME
SBS Chr3 10017664 C-T Hetero INTERGENIC
SBS Chr3 17943868 A-G Homo INTERGENIC
SBS Chr3 26686410 C-T Hetero INTERGENIC
SBS Chr3 27485887 A-G Hetero INTRON
SBS Chr3 29947006 C-T Hetero INTRON
SBS Chr4 4674306 C-T Homo INTERGENIC
SBS Chr4 8520846 G-A Homo INTERGENIC
SBS Chr4 23767113 C-T Hetero INTERGENIC
SBS Chr4 25594195 C-T Hetero INTERGENIC
SBS Chr4 27675579 C-T Hetero INTERGENIC
SBS Chr4 31418520 T-A Hetero INTERGENIC
SBS Chr4 34464340 G-A Hetero INTERGENIC
SBS Chr4 34586264 A-G Hetero INTRON
SBS Chr4 36641573 G-A Hetero INTERGENIC
SBS Chr5 14056573 G-T Hetero INTERGENIC
SBS Chr6 22058509 C-T Hetero INTRON
SBS Chr7 10477571 C-T Hetero INTERGENIC
SBS Chr7 13155424 C-G Hetero UTR_5_PRIME
SBS Chr7 15797867 C-T Homo INTERGENIC
SBS Chr7 19312814 G-A Hetero INTRON
SBS Chr7 22831303 T-A Hetero INTERGENIC
SBS Chr7 26636703 A-C Homo SYNONYMOUS_CODING
SBS Chr8 6592673 G-A Hetero INTERGENIC
SBS Chr8 8364528 T-A Homo INTERGENIC
SBS Chr8 27008100 A-T Hetero INTERGENIC
SBS Chr8 28874229 A-T Hetero INTRON
SBS Chr9 2897207 G-A Hetero INTERGENIC
SBS Chr10 3996325 G-A Hetero INTERGENIC
SBS Chr11 16327280 C-T Hetero INTERGENIC
SBS Chr11 18230297 A-G Hetero INTERGENIC
SBS Chr12 11986009 C-T Hetero INTRON
SBS Chr12 22936355 T-C Homo INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 953915 953917 2
Deletion Chr12 2264178 2264180 2
Deletion Chr4 4087001 4878000 790999 20
Deletion Chr3 5107281 5107291 10
Deletion Chr10 5135594 5135596 2
Deletion Chr12 5571809 5571813 4
Deletion Chr7 7272121 7272122 1
Deletion Chr9 12223017 12223018 1
Deletion Chr7 13163062 13163074 12
Deletion Chr11 13833501 13833505 4
Deletion Chr1 15367960 15367964 4
Deletion Chr11 16584975 16584976 1
Deletion Chr4 17087508 17087512 4
Deletion Chr4 20804497 20804499 2
Deletion Chr4 21862018 21862022 4
Deletion Chr2 24332750 24332752 2
Deletion Chr2 31799885 31799893 8
Deletion Chr1 32247026 32247032 6
Deletion Chr1 38575784 38575813 29

Insertions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 9643192 9643195 2
Insertion Chr3 17803102 17803105 2
Insertion Chr4 30540499 30540502 2
Insertion Chr5 646519 646523 3
Insertion Chr6 16503527 16503531 3
Insertion Chr7 4265644 4265646 1
Insertion Chr7 18842522 18842525 2
Insertion Chr8 24449537 24449539 1 OsKitaake08g189300
Insertion Chr9 19397670 19397673 2
Insertion Chr9 21403262 21403264 1
Insertion Chr10 14863282 14863286 3
Insertion Chr11 9864023 9864029 5
Insertion Chr12 25366955 25366958 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 18363612 18630352 OsKitaake05g142900
Inversion Chr5 18363622 18630494 OsKitaake05g142900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18847254	G-A	Hetero	INTERGENIC
SBS	Chr1	23749922	T-G	Hetero	INTERGENIC
SBS	Chr1	23749924	G-A	Hetero	INTERGENIC
SBS	Chr1	25516039	T-C	Hetero	INTERGENIC
SBS	Chr1	29889083	G-A	Hetero	INTERGENIC
SBS	Chr2	16478282	G-T	Hetero	UTR_5_PRIME
SBS	Chr2	29539978	C-T	Hetero	INTERGENIC
SBS	Chr2	30939453	T-C	Hetero	UTR_3_PRIME
SBS	Chr2	31400239	T-A	Hetero	INTERGENIC
SBS	Chr3	5117694	C-T	Homo	UTR_5_PRIME
SBS	Chr3	10017664	C-T	Hetero	INTERGENIC
SBS	Chr3	17943868	A-G	Homo	INTERGENIC
SBS	Chr3	26686410	C-T	Hetero	INTERGENIC
SBS	Chr3	27485887	A-G	Hetero	INTRON
SBS	Chr3	29947006	C-T	Hetero	INTRON
SBS	Chr4	4674306	C-T	Homo	INTERGENIC
SBS	Chr4	8520846	G-A	Homo	INTERGENIC
SBS	Chr4	23767113	C-T	Hetero	INTERGENIC
SBS	Chr4	25594195	C-T	Hetero	INTERGENIC
SBS	Chr4	27675579	C-T	Hetero	INTERGENIC
SBS	Chr4	31418520	T-A	Hetero	INTERGENIC
SBS	Chr4	34464340	G-A	Hetero	INTERGENIC
SBS	Chr4	34586264	A-G	Hetero	INTRON
SBS	Chr4	36641573	G-A	Hetero	INTERGENIC
SBS	Chr5	14056573	G-T	Hetero	INTERGENIC
SBS	Chr6	22058509	C-T	Hetero	INTRON
SBS	Chr7	10477571	C-T	Hetero	INTERGENIC
SBS	Chr7	13155424	C-G	Hetero	UTR_5_PRIME
SBS	Chr7	15797867	C-T	Homo	INTERGENIC
SBS	Chr7	19312814	G-A	Hetero	INTRON
SBS	Chr7	22831303	T-A	Hetero	INTERGENIC
SBS	Chr7	26636703	A-C	Homo	SYNONYMOUS_CODING
SBS	Chr8	6592673	G-A	Hetero	INTERGENIC
SBS	Chr8	8364528	T-A	Homo	INTERGENIC
SBS	Chr8	27008100	A-T	Hetero	INTERGENIC
SBS	Chr8	28874229	A-T	Hetero	INTRON
SBS	Chr9	2897207	G-A	Hetero	INTERGENIC
SBS	Chr10	3996325	G-A	Hetero	INTERGENIC
SBS	Chr11	16327280	C-T	Hetero	INTERGENIC
SBS	Chr11	18230297	A-G	Hetero	INTERGENIC
SBS	Chr12	11986009	C-T	Hetero	INTRON
SBS	Chr12	22936355	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	953915	953917	2
Deletion	Chr12	2264178	2264180	2
Deletion	Chr4	4087001	4878000	790999	20
Deletion	Chr3	5107281	5107291	10
Deletion	Chr10	5135594	5135596	2
Deletion	Chr12	5571809	5571813	4
Deletion	Chr7	7272121	7272122	1
Deletion	Chr9	12223017	12223018	1
Deletion	Chr7	13163062	13163074	12
Deletion	Chr11	13833501	13833505	4
Deletion	Chr1	15367960	15367964	4
Deletion	Chr11	16584975	16584976	1
Deletion	Chr4	17087508	17087512	4
Deletion	Chr4	20804497	20804499	2
Deletion	Chr4	21862018	21862022	4
Deletion	Chr2	24332750	24332752	2
Deletion	Chr2	31799885	31799893	8
Deletion	Chr1	32247026	32247032	6
Deletion	Chr1	38575784	38575813	29

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	18363612	18630352	OsKitaake05g142900
Inversion	Chr5	18363622	18630494	OsKitaake05g142900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes