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Mutant Information

Mutant Name	FN2272-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2272-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6745329 A-T Hetero INTRON
SBS Chr1 9380576 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g120200
SBS Chr1 11041802 T-A Hetero INTERGENIC
SBS Chr1 21015587 G-C Hetero INTERGENIC
SBS Chr1 24218876 A-G Hetero INTRON
SBS Chr1 27945045 T-A Hetero INTERGENIC
SBS Chr2 27735862 T-A Hetero INTERGENIC
SBS Chr2 27808697 G-A Hetero INTERGENIC
SBS Chr2 32066571 C-A Hetero INTERGENIC
SBS Chr3 875426 A-G Hetero INTRON
SBS Chr3 9328080 A-T Homo INTERGENIC
SBS Chr3 26829013 C-T Hetero INTERGENIC
SBS Chr3 31305442 C-T Homo INTRON
SBS Chr3 34020563 A-C Hetero INTRON
SBS Chr4 1473884 C-T Homo INTERGENIC
SBS Chr4 2883094 G-C Hetero INTERGENIC
SBS Chr4 9310068 C-T Hetero INTERGENIC
SBS Chr4 28700640 G-A Hetero INTERGENIC
SBS Chr5 4007216 A-T Hetero INTERGENIC
SBS Chr5 4945779 C-T Hetero INTERGENIC
SBS Chr5 6629705 T-A Hetero INTERGENIC
SBS Chr5 12814724 G-A Homo INTERGENIC
SBS Chr5 21895980 C-T Homo INTERGENIC
SBS Chr6 2913215 T-C Hetero INTRON
SBS Chr6 18341537 C-T Hetero INTERGENIC
SBS Chr6 21691745 C-T Hetero INTERGENIC
SBS Chr7 12158364 C-T Homo INTERGENIC
SBS Chr7 24870555 G-A Homo INTERGENIC
SBS Chr7 26802485 G-A Homo INTERGENIC
SBS Chr8 15034510 C-T Homo INTERGENIC
SBS Chr8 24058550 T-C Hetero INTERGENIC
SBS Chr8 25667308 A-T Hetero INTERGENIC
SBS Chr9 7090097 A-G Homo INTERGENIC
SBS Chr9 11246028 G-A Homo INTERGENIC
SBS Chr10 2744870 C-T Hetero INTERGENIC
SBS Chr10 7764567 G-A Hetero INTERGENIC
SBS Chr11 7483113 A-C Hetero INTRON
SBS Chr11 10318911 C-A Hetero INTERGENIC
SBS Chr12 19704513 A-G Homo INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 600621 600627 6
Deletion Chr3 3048585 3048588 3 OsKitaake03g042900
Deletion Chr11 3093920 3093924 4
Deletion Chr5 3578376 3578380 4
Deletion Chr10 4161284 4161292 8
Deletion Chr4 4812068 4812073 5
Deletion Chr9 5270087 5270089 2
Deletion Chr9 7302737 7302764 27
Deletion Chr9 8382220 8382229 9
Deletion Chr5 9273386 9273387 1
Deletion Chr10 13888787 13888796 9 OsKitaake10g084800
Deletion Chr8 14384408 14384417 9
Deletion Chr3 15174324 15174331 7 OsKitaake03g196900
Deletion Chr6 21588226 21588227 1 OsKitaake06g191000
Deletion Chr7 21990747 21990759 12
Deletion Chr12 22115343 22115360 17
Deletion Chr6 26376389 26376412 23
Deletion Chr8 28073683 28073685 2
Deletion Chr6 29740153 29740161 8
Deletion Chr1 35997876 35997890 14
Deletion Chr1 37950593 37950595 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 31371343 31371346 2
Insertion Chr8 10713819 10713826 6
Insertion Chr8 15510718 15510722 3

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6745329	A-T	Hetero	INTRON
SBS	Chr1	9380576	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g120200
SBS	Chr1	11041802	T-A	Hetero	INTERGENIC
SBS	Chr1	21015587	G-C	Hetero	INTERGENIC
SBS	Chr1	24218876	A-G	Hetero	INTRON
SBS	Chr1	27945045	T-A	Hetero	INTERGENIC
SBS	Chr2	27735862	T-A	Hetero	INTERGENIC
SBS	Chr2	27808697	G-A	Hetero	INTERGENIC
SBS	Chr2	32066571	C-A	Hetero	INTERGENIC
SBS	Chr3	875426	A-G	Hetero	INTRON
SBS	Chr3	9328080	A-T	Homo	INTERGENIC
SBS	Chr3	26829013	C-T	Hetero	INTERGENIC
SBS	Chr3	31305442	C-T	Homo	INTRON
SBS	Chr3	34020563	A-C	Hetero	INTRON
SBS	Chr4	1473884	C-T	Homo	INTERGENIC
SBS	Chr4	2883094	G-C	Hetero	INTERGENIC
SBS	Chr4	9310068	C-T	Hetero	INTERGENIC
SBS	Chr4	28700640	G-A	Hetero	INTERGENIC
SBS	Chr5	4007216	A-T	Hetero	INTERGENIC
SBS	Chr5	4945779	C-T	Hetero	INTERGENIC
SBS	Chr5	6629705	T-A	Hetero	INTERGENIC
SBS	Chr5	12814724	G-A	Homo	INTERGENIC
SBS	Chr5	21895980	C-T	Homo	INTERGENIC
SBS	Chr6	2913215	T-C	Hetero	INTRON
SBS	Chr6	18341537	C-T	Hetero	INTERGENIC
SBS	Chr6	21691745	C-T	Hetero	INTERGENIC
SBS	Chr7	12158364	C-T	Homo	INTERGENIC
SBS	Chr7	24870555	G-A	Homo	INTERGENIC
SBS	Chr7	26802485	G-A	Homo	INTERGENIC
SBS	Chr8	15034510	C-T	Homo	INTERGENIC
SBS	Chr8	24058550	T-C	Hetero	INTERGENIC
SBS	Chr8	25667308	A-T	Hetero	INTERGENIC
SBS	Chr9	7090097	A-G	Homo	INTERGENIC
SBS	Chr9	11246028	G-A	Homo	INTERGENIC
SBS	Chr10	2744870	C-T	Hetero	INTERGENIC
SBS	Chr10	7764567	G-A	Hetero	INTERGENIC
SBS	Chr11	7483113	A-C	Hetero	INTRON
SBS	Chr11	10318911	C-A	Hetero	INTERGENIC
SBS	Chr12	19704513	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	600621	600627	6
Deletion	Chr3	3048585	3048588	3	OsKitaake03g042900
Deletion	Chr11	3093920	3093924	4
Deletion	Chr5	3578376	3578380	4
Deletion	Chr10	4161284	4161292	8
Deletion	Chr4	4812068	4812073	5
Deletion	Chr9	5270087	5270089	2
Deletion	Chr9	7302737	7302764	27
Deletion	Chr9	8382220	8382229	9
Deletion	Chr5	9273386	9273387	1
Deletion	Chr10	13888787	13888796	9	OsKitaake10g084800
Deletion	Chr8	14384408	14384417	9
Deletion	Chr3	15174324	15174331	7	OsKitaake03g196900
Deletion	Chr6	21588226	21588227	1	OsKitaake06g191000
Deletion	Chr7	21990747	21990759	12
Deletion	Chr12	22115343	22115360	17
Deletion	Chr6	26376389	26376412	23
Deletion	Chr8	28073683	28073685	2
Deletion	Chr6	29740153	29740161	8
Deletion	Chr1	35997876	35997890	14
Deletion	Chr1	37950593	37950595	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes