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Mutant Information

Mutant Name	FN2273-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2273-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7939320 T-C Homo INTERGENIC
SBS Chr1 24486695 C-A Hetero INTERGENIC
SBS Chr1 36204861 A-T Hetero INTERGENIC
SBS Chr1 40305399 T-A Homo UTR_3_PRIME
SBS Chr1 43478690 G-A Hetero INTERGENIC
SBS Chr2 11194925 G-A Hetero INTERGENIC
SBS Chr2 14988592 G-A Homo INTERGENIC
SBS Chr2 36338027 A-G Homo INTRON
SBS Chr3 5307341 G-A Homo SYNONYMOUS_CODING
SBS Chr3 28162775 C-T Hetero INTERGENIC
SBS Chr3 32794311 A-G Hetero INTERGENIC
SBS Chr3 37679356 G-C Hetero UTR_5_PRIME
SBS Chr4 19936057 G-T Hetero INTERGENIC
SBS Chr4 24344963 G-T Hetero UTR_3_PRIME
SBS Chr4 24344964 C-T Hetero UTR_3_PRIME
SBS Chr5 13727249 A-G Homo SYNONYMOUS_CODING
SBS Chr5 23592161 A-T Homo INTERGENIC
SBS Chr6 9061504 G-A Hetero INTERGENIC
SBS Chr6 20855442 A-C Hetero INTERGENIC
SBS Chr7 10818467 C-T Hetero INTERGENIC
SBS Chr7 15390787 G-A Hetero INTERGENIC
SBS Chr7 22599783 A-G Hetero INTERGENIC
SBS Chr8 6910181 C-G Homo INTERGENIC
SBS Chr9 20094376 T-A Homo NON_SYNONYMOUS_CODING OsKitaake09g168000
SBS Chr10 3432436 G-A Hetero INTERGENIC
SBS Chr10 8080152 G-A Homo INTERGENIC
SBS Chr10 8080153 T-A Homo INTERGENIC
SBS Chr10 11023344 C-T Homo INTERGENIC
SBS Chr10 13239143 C-A Hetero INTERGENIC
SBS Chr12 14198269 G-A Hetero INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 3367358 3367376 18
Deletion Chr9 3708249 3708261 12
Deletion Chr5 3768258 3768265 7
Deletion Chr12 4400259 4400271 12
Deletion Chr1 4728284 4728286 2
Deletion Chr8 6028442 6028443 1
Deletion Chr1 8816584 8816589 5
Deletion Chr8 10304501 10304508 7
Deletion Chr5 10541530 10541536 6
Deletion Chr8 13420001 13429000 8999 OsKitaake08g110420
Deletion Chr8 13655001 13667000 11999
Deletion Chr8 13671001 13732000 60999 OsKitaake08g110700
Deletion Chr8 13736001 13790000 53999
Deletion Chr8 13792001 13892000 99999 OsKitaake08g110801
Deletion Chr6 15257063 15257068 5
Deletion Chr5 16302918 16302922 4
Deletion Chr12 16414760 16414764 4
Deletion Chr4 23368514 23368520 6 OsKitaake04g143800
Deletion Chr5 24114046 24114051 5 OsKitaake05g213601
Deletion Chr11 26413433 26413434 1
Deletion Chr4 34817679 34817683 4

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 4412036 4412040 3
Insertion Chr7 3181963 3181966 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 9831599 10634200 OsKitaake08g096000

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 10634183 Chr7 2369142 2
Translocation Chr8 23265694 Chr7 2364729

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7939320	T-C	Homo	INTERGENIC
SBS	Chr1	24486695	C-A	Hetero	INTERGENIC
SBS	Chr1	36204861	A-T	Hetero	INTERGENIC
SBS	Chr1	40305399	T-A	Homo	UTR_3_PRIME
SBS	Chr1	43478690	G-A	Hetero	INTERGENIC
SBS	Chr2	11194925	G-A	Hetero	INTERGENIC
SBS	Chr2	14988592	G-A	Homo	INTERGENIC
SBS	Chr2	36338027	A-G	Homo	INTRON
SBS	Chr3	5307341	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr3	28162775	C-T	Hetero	INTERGENIC
SBS	Chr3	32794311	A-G	Hetero	INTERGENIC
SBS	Chr3	37679356	G-C	Hetero	UTR_5_PRIME
SBS	Chr4	19936057	G-T	Hetero	INTERGENIC
SBS	Chr4	24344963	G-T	Hetero	UTR_3_PRIME
SBS	Chr4	24344964	C-T	Hetero	UTR_3_PRIME
SBS	Chr5	13727249	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr5	23592161	A-T	Homo	INTERGENIC
SBS	Chr6	9061504	G-A	Hetero	INTERGENIC
SBS	Chr6	20855442	A-C	Hetero	INTERGENIC
SBS	Chr7	10818467	C-T	Hetero	INTERGENIC
SBS	Chr7	15390787	G-A	Hetero	INTERGENIC
SBS	Chr7	22599783	A-G	Hetero	INTERGENIC
SBS	Chr8	6910181	C-G	Homo	INTERGENIC
SBS	Chr9	20094376	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g168000
SBS	Chr10	3432436	G-A	Hetero	INTERGENIC
SBS	Chr10	8080152	G-A	Homo	INTERGENIC
SBS	Chr10	8080153	T-A	Homo	INTERGENIC
SBS	Chr10	11023344	C-T	Homo	INTERGENIC
SBS	Chr10	13239143	C-A	Hetero	INTERGENIC
SBS	Chr12	14198269	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	3367358	3367376	18
Deletion	Chr9	3708249	3708261	12
Deletion	Chr5	3768258	3768265	7
Deletion	Chr12	4400259	4400271	12
Deletion	Chr1	4728284	4728286	2
Deletion	Chr8	6028442	6028443	1
Deletion	Chr1	8816584	8816589	5
Deletion	Chr8	10304501	10304508	7
Deletion	Chr5	10541530	10541536	6
Deletion	Chr8	13420001	13429000	8999	OsKitaake08g110420
Deletion	Chr8	13655001	13667000	11999
Deletion	Chr8	13671001	13732000	60999	OsKitaake08g110700
Deletion	Chr8	13736001	13790000	53999
Deletion	Chr8	13792001	13892000	99999	OsKitaake08g110801
Deletion	Chr6	15257063	15257068	5
Deletion	Chr5	16302918	16302922	4
Deletion	Chr12	16414760	16414764	4
Deletion	Chr4	23368514	23368520	6	OsKitaake04g143800
Deletion	Chr5	24114046	24114051	5	OsKitaake05g213601
Deletion	Chr11	26413433	26413434	1
Deletion	Chr4	34817679	34817683	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	9831599	10634200	OsKitaake08g096000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes