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Mutant Information

Mutant Name	FN2276-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2276-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 32724671 C-T Hetero INTERGENIC
SBS Chr2 10596114 C-T Homo INTERGENIC
SBS Chr2 31310775 A-T Hetero INTERGENIC
SBS Chr3 3556000 A-T Hetero INTERGENIC
SBS Chr3 23873944 C-T Homo INTERGENIC
SBS Chr3 29478003 T-A Hetero INTERGENIC
SBS Chr4 4667834 G-A Homo INTERGENIC
SBS Chr4 26200636 G-C Homo INTRON
SBS Chr4 28702958 T-A Homo INTERGENIC
SBS Chr4 36440106 C-T Hetero INTERGENIC
SBS Chr5 10822673 G-T Hetero INTERGENIC
SBS Chr5 22020924 C-T Hetero INTERGENIC
SBS Chr7 8378984 C-T Hetero INTERGENIC
SBS Chr7 17957854 C-G Homo INTERGENIC
SBS Chr8 17410650 G-A Homo INTERGENIC
SBS Chr9 6581047 C-T Homo INTERGENIC
SBS Chr9 9756992 C-T Homo INTRON
SBS Chr9 21924228 T-C Hetero INTRON
SBS Chr9 22211497 A-G Hetero INTERGENIC
SBS Chr10 125850 G-A Hetero INTERGENIC
SBS Chr11 4591910 G-A Hetero INTERGENIC
SBS Chr11 6861874 G-T Homo INTERGENIC
SBS Chr11 8158455 G-T Hetero INTERGENIC
SBS Chr11 12712009 C-T Hetero INTERGENIC
SBS Chr12 7878022 C-G Hetero INTERGENIC
SBS Chr12 8323164 T-C Hetero UTR_5_PRIME
SBS Chr12 25175749 C-G Hetero INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 453752 453754 2
Deletion Chr6 2324026 2324027 1
Deletion Chr1 2787069 2787079 10
Deletion Chr1 3837452 3837453 1
Deletion Chr11 4267001 4284000 16999 OsKitaake11g057300
Deletion Chr3 5357870 5357874 4
Deletion Chr12 5521258 5521263 5 OsKitaake12g067500
Deletion Chr5 6052001 6072000 19999 4
Deletion Chr10 11517058 11517060 2 OsKitaake10g165824
Deletion Chr6 11714952 11714955 3 OsKitaake06g127900
Deletion Chr10 12883425 12883430 5
Deletion Chr1 13810254 13810258 4
Deletion Chr2 14315068 14315074 6
Deletion Chr5 17228496 17228497 1
Deletion Chr4 17386867 17386870 3
Deletion Chr7 18145182 18145193 11
Deletion Chr11 19116621 19116624 3
Deletion Chr3 20158846 20158849 3
Deletion Chr11 20870060 20870071 11
Deletion Chr3 22799506 22799513 7
Deletion Chr1 23904126 23904127 1 OsKitaake01g229600
Deletion Chr11 27747008 27747017 9

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 10709283 10709286 2
Insertion Chr11 2375977 2375980 2
Insertion Chr12 2285858 2285861 2
Insertion Chr12 12758617 12758620 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 5735419 6071926
Inversion Chr5 6031709 6054315
Inversion Chr7 17712825 18219032 2
Inversion Chr7 17712837 18219042 2
Inversion Chr12 22927589 23069539

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 7286008 Chr7 27638051 OsKitaake07g257800
Translocation Chr8 7286725 Chr7 27638039 OsKitaake07g257800
Translocation Chr8 7286726 Chr2 37083609
Translocation Chr10 12435897 Chr8 23144345
Translocation Chr10 12436778 Chr8 23144351
Translocation Chr12 20987726 Chr1 16338869
Translocation Chr12 23069533 Chr1 16339600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	32724671	C-T	Hetero	INTERGENIC
SBS	Chr2	10596114	C-T	Homo	INTERGENIC
SBS	Chr2	31310775	A-T	Hetero	INTERGENIC
SBS	Chr3	3556000	A-T	Hetero	INTERGENIC
SBS	Chr3	23873944	C-T	Homo	INTERGENIC
SBS	Chr3	29478003	T-A	Hetero	INTERGENIC
SBS	Chr4	4667834	G-A	Homo	INTERGENIC
SBS	Chr4	26200636	G-C	Homo	INTRON
SBS	Chr4	28702958	T-A	Homo	INTERGENIC
SBS	Chr4	36440106	C-T	Hetero	INTERGENIC
SBS	Chr5	10822673	G-T	Hetero	INTERGENIC
SBS	Chr5	22020924	C-T	Hetero	INTERGENIC
SBS	Chr7	8378984	C-T	Hetero	INTERGENIC
SBS	Chr7	17957854	C-G	Homo	INTERGENIC
SBS	Chr8	17410650	G-A	Homo	INTERGENIC
SBS	Chr9	6581047	C-T	Homo	INTERGENIC
SBS	Chr9	9756992	C-T	Homo	INTRON
SBS	Chr9	21924228	T-C	Hetero	INTRON
SBS	Chr9	22211497	A-G	Hetero	INTERGENIC
SBS	Chr10	125850	G-A	Hetero	INTERGENIC
SBS	Chr11	4591910	G-A	Hetero	INTERGENIC
SBS	Chr11	6861874	G-T	Homo	INTERGENIC
SBS	Chr11	8158455	G-T	Hetero	INTERGENIC
SBS	Chr11	12712009	C-T	Hetero	INTERGENIC
SBS	Chr12	7878022	C-G	Hetero	INTERGENIC
SBS	Chr12	8323164	T-C	Hetero	UTR_5_PRIME
SBS	Chr12	25175749	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	453752	453754	2
Deletion	Chr6	2324026	2324027	1
Deletion	Chr1	2787069	2787079	10
Deletion	Chr1	3837452	3837453	1
Deletion	Chr11	4267001	4284000	16999	OsKitaake11g057300
Deletion	Chr3	5357870	5357874	4
Deletion	Chr12	5521258	5521263	5	OsKitaake12g067500
Deletion	Chr5	6052001	6072000	19999	4
Deletion	Chr10	11517058	11517060	2	OsKitaake10g165824
Deletion	Chr6	11714952	11714955	3	OsKitaake06g127900
Deletion	Chr10	12883425	12883430	5
Deletion	Chr1	13810254	13810258	4
Deletion	Chr2	14315068	14315074	6
Deletion	Chr5	17228496	17228497	1
Deletion	Chr4	17386867	17386870	3
Deletion	Chr7	18145182	18145193	11
Deletion	Chr11	19116621	19116624	3
Deletion	Chr3	20158846	20158849	3
Deletion	Chr11	20870060	20870071	11
Deletion	Chr3	22799506	22799513	7
Deletion	Chr1	23904126	23904127	1	OsKitaake01g229600
Deletion	Chr11	27747008	27747017	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	5735419	6071926
Inversion	Chr5	6031709	6054315
Inversion	Chr7	17712825	18219032	2
Inversion	Chr7	17712837	18219042	2
Inversion	Chr12	22927589	23069539

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes