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Mutant Information

Mutant Name	FN2281 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2281 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 54

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16600530 C-T Hetero INTERGENIC
SBS Chr1 17734648 G-A Hetero INTERGENIC
SBS Chr1 17939861 C-G Hetero INTERGENIC
SBS Chr1 35692941 G-A Hetero INTERGENIC
SBS Chr2 2819818 A-T Homo UTR_3_PRIME
SBS Chr2 18417376 A-G Hetero INTERGENIC
SBS Chr2 33430845 C-T Hetero INTERGENIC
SBS Chr3 3372797 G-T Homo NON_SYNONYMOUS_CODING OsKitaake03g047700
SBS Chr3 3874685 G-A Hetero INTERGENIC
SBS Chr3 9593614 C-A Hetero INTERGENIC
SBS Chr3 20281637 C-G Hetero INTERGENIC
SBS Chr3 22446464 C-T Hetero INTERGENIC
SBS Chr3 26078056 C-T Hetero INTERGENIC
SBS Chr3 33852755 A-G Hetero INTRON
SBS Chr3 34338461 G-T Hetero INTERGENIC
SBS Chr4 4441367 C-T Hetero INTERGENIC
SBS Chr4 14268422 G-A Hetero INTERGENIC
SBS Chr4 14336686 T-A Hetero INTERGENIC
SBS Chr4 14483781 G-A Hetero INTERGENIC
SBS Chr4 14949457 G-A Hetero INTERGENIC
SBS Chr4 14949458 C-G Hetero INTERGENIC
SBS Chr4 20492342 G-A Hetero INTERGENIC
SBS Chr4 20492343 C-A Hetero INTERGENIC
SBS Chr4 28806899 A-G Hetero INTERGENIC
SBS Chr5 4159162 C-G Hetero INTERGENIC
SBS Chr5 15280535 T-A Hetero INTERGENIC
SBS Chr5 15858777 C-T Hetero INTERGENIC
SBS Chr5 27507994 A-G Homo INTRON
SBS Chr5 30246337 A-T Hetero INTERGENIC
SBS Chr6 3438573 C-G Hetero INTRON
SBS Chr6 3969332 G-A Hetero UTR_3_PRIME
SBS Chr6 6196783 T-C Hetero INTERGENIC
SBS Chr6 10830109 C-T Hetero INTERGENIC
SBS Chr6 20975379 C-A Homo INTERGENIC
SBS Chr7 6593354 G-A Hetero INTERGENIC
SBS Chr7 6773764 C-A Hetero INTERGENIC
SBS Chr7 7070404 G-A Hetero INTERGENIC
SBS Chr7 17758262 C-T Homo INTERGENIC
SBS Chr8 16412959 A-G Hetero INTERGENIC
SBS Chr8 17074405 T-A Hetero INTERGENIC
SBS Chr8 18475123 G-A Hetero INTERGENIC
SBS Chr8 28830100 A-G Hetero UTR_5_PRIME
SBS Chr9 6957478 C-A Homo INTERGENIC
SBS Chr9 14489838 A-G Hetero INTERGENIC
SBS Chr10 3802455 C-T Hetero INTERGENIC
SBS Chr10 8498337 G-A Homo INTERGENIC
SBS Chr10 23996980 C-T Hetero INTERGENIC
SBS Chr11 2217780 G-A Homo INTERGENIC
SBS Chr11 7266200 G-A Hetero INTERGENIC
SBS Chr11 11512406 C-T Hetero INTERGENIC
SBS Chr11 27014486 G-A Hetero INTRON
SBS Chr12 3475972 C-T Hetero INTERGENIC
SBS Chr12 16166286 G-A Hetero INTERGENIC
SBS Chr12 22731461 T-A Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 1077552 1077554 2
Deletion Chr11 1106001 1214000 107999 12
Deletion Chr12 4878819 4878821 2
Deletion Chr5 4929827 4929828 1
Deletion Chr12 5147684 5147685 1
Deletion Chr12 5753531 5753541 10 OsKitaake12g069800
Deletion Chr6 12323546 12323548 2
Deletion Chr9 13675057 13675060 3
Deletion Chr4 17262751 17262752 1
Deletion Chr7 19897616 19897618 2 OsKitaake07g162900
Deletion Chr3 21290375 21290376 1
Deletion Chr9 22247529 22247537 8
Deletion Chr11 22380826 22380827 1
Deletion Chr8 22864332 22864338 6
Deletion Chr2 26186466 26186467 1
Deletion Chr1 28458402 28458407 5
Deletion Chr7 29366292 29366293 1 OsKitaake07g282300
Deletion Chr6 30711311 30711318 7
Deletion Chr1 32828932 32828941 9
Deletion Chr1 36177255 36177256 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 1347710 1347713 2
Insertion Chr4 7483059 7483062 2
Insertion Chr6 24012680 24012683 2
Insertion Chr9 18630496 18630499 2

Inversions: 8

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 2554220 2770379
Inversion Chr7 2554228 2770389
Inversion Chr8 8005484 8629554 2
Inversion Chr8 8005489 8629556 2
Inversion Chr12 11013175 11213716 OsKitaake12g102100
Inversion Chr12 11013177 11213720 OsKitaake12g102100
Inversion Chr4 20429836 20718217 2
Inversion Chr4 20430312 20718239 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 7461131 Chr6 20136296
Translocation Chr7 7461135 Chr2 8084441

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16600530	C-T	Hetero	INTERGENIC
SBS	Chr1	17734648	G-A	Hetero	INTERGENIC
SBS	Chr1	17939861	C-G	Hetero	INTERGENIC
SBS	Chr1	35692941	G-A	Hetero	INTERGENIC
SBS	Chr2	2819818	A-T	Homo	UTR_3_PRIME
SBS	Chr2	18417376	A-G	Hetero	INTERGENIC
SBS	Chr2	33430845	C-T	Hetero	INTERGENIC
SBS	Chr3	3372797	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g047700
SBS	Chr3	3874685	G-A	Hetero	INTERGENIC
SBS	Chr3	9593614	C-A	Hetero	INTERGENIC
SBS	Chr3	20281637	C-G	Hetero	INTERGENIC
SBS	Chr3	22446464	C-T	Hetero	INTERGENIC
SBS	Chr3	26078056	C-T	Hetero	INTERGENIC
SBS	Chr3	33852755	A-G	Hetero	INTRON
SBS	Chr3	34338461	G-T	Hetero	INTERGENIC
SBS	Chr4	4441367	C-T	Hetero	INTERGENIC
SBS	Chr4	14268422	G-A	Hetero	INTERGENIC
SBS	Chr4	14336686	T-A	Hetero	INTERGENIC
SBS	Chr4	14483781	G-A	Hetero	INTERGENIC
SBS	Chr4	14949457	G-A	Hetero	INTERGENIC
SBS	Chr4	14949458	C-G	Hetero	INTERGENIC
SBS	Chr4	20492342	G-A	Hetero	INTERGENIC
SBS	Chr4	20492343	C-A	Hetero	INTERGENIC
SBS	Chr4	28806899	A-G	Hetero	INTERGENIC
SBS	Chr5	4159162	C-G	Hetero	INTERGENIC
SBS	Chr5	15280535	T-A	Hetero	INTERGENIC
SBS	Chr5	15858777	C-T	Hetero	INTERGENIC
SBS	Chr5	27507994	A-G	Homo	INTRON
SBS	Chr5	30246337	A-T	Hetero	INTERGENIC
SBS	Chr6	3438573	C-G	Hetero	INTRON
SBS	Chr6	3969332	G-A	Hetero	UTR_3_PRIME
SBS	Chr6	6196783	T-C	Hetero	INTERGENIC
SBS	Chr6	10830109	C-T	Hetero	INTERGENIC
SBS	Chr6	20975379	C-A	Homo	INTERGENIC
SBS	Chr7	6593354	G-A	Hetero	INTERGENIC
SBS	Chr7	6773764	C-A	Hetero	INTERGENIC
SBS	Chr7	7070404	G-A	Hetero	INTERGENIC
SBS	Chr7	17758262	C-T	Homo	INTERGENIC
SBS	Chr8	16412959	A-G	Hetero	INTERGENIC
SBS	Chr8	17074405	T-A	Hetero	INTERGENIC
SBS	Chr8	18475123	G-A	Hetero	INTERGENIC
SBS	Chr8	28830100	A-G	Hetero	UTR_5_PRIME
SBS	Chr9	6957478	C-A	Homo	INTERGENIC
SBS	Chr9	14489838	A-G	Hetero	INTERGENIC
SBS	Chr10	3802455	C-T	Hetero	INTERGENIC
SBS	Chr10	8498337	G-A	Homo	INTERGENIC
SBS	Chr10	23996980	C-T	Hetero	INTERGENIC
SBS	Chr11	2217780	G-A	Homo	INTERGENIC
SBS	Chr11	7266200	G-A	Hetero	INTERGENIC
SBS	Chr11	11512406	C-T	Hetero	INTERGENIC
SBS	Chr11	27014486	G-A	Hetero	INTRON
SBS	Chr12	3475972	C-T	Hetero	INTERGENIC
SBS	Chr12	16166286	G-A	Hetero	INTERGENIC
SBS	Chr12	22731461	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1077552	1077554	2
Deletion	Chr11	1106001	1214000	107999	12
Deletion	Chr12	4878819	4878821	2
Deletion	Chr5	4929827	4929828	1
Deletion	Chr12	5147684	5147685	1
Deletion	Chr12	5753531	5753541	10	OsKitaake12g069800
Deletion	Chr6	12323546	12323548	2
Deletion	Chr9	13675057	13675060	3
Deletion	Chr4	17262751	17262752	1
Deletion	Chr7	19897616	19897618	2	OsKitaake07g162900
Deletion	Chr3	21290375	21290376	1
Deletion	Chr9	22247529	22247537	8
Deletion	Chr11	22380826	22380827	1
Deletion	Chr8	22864332	22864338	6
Deletion	Chr2	26186466	26186467	1
Deletion	Chr1	28458402	28458407	5
Deletion	Chr7	29366292	29366293	1	OsKitaake07g282300
Deletion	Chr6	30711311	30711318	7
Deletion	Chr1	32828932	32828941	9
Deletion	Chr1	36177255	36177256	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	2554220	2770379
Inversion	Chr7	2554228	2770389
Inversion	Chr8	8005484	8629554	2
Inversion	Chr8	8005489	8629556	2
Inversion	Chr12	11013175	11213716	OsKitaake12g102100
Inversion	Chr12	11013177	11213720	OsKitaake12g102100
Inversion	Chr4	20429836	20718217	2
Inversion	Chr4	20430312	20718239	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes