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Mutant Information

Mutant Name	FN2282 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2282 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2172117 G-T Hetero INTERGENIC
SBS Chr1 27140369 G-T Homo INTERGENIC
SBS Chr2 12445788 A-C Hetero INTERGENIC
SBS Chr2 33429315 A-G Hetero INTERGENIC
SBS Chr3 3383858 A-C Hetero INTERGENIC
SBS Chr3 22177306 C-T Hetero INTRON
SBS Chr3 27692465 A-G Hetero INTERGENIC
SBS Chr3 29287230 C-T Hetero INTERGENIC
SBS Chr4 14486774 G-A Hetero INTERGENIC
SBS Chr5 20460572 G-A Hetero INTERGENIC
SBS Chr6 787168 G-C Hetero INTERGENIC
SBS Chr6 7499739 G-A Hetero INTERGENIC
SBS Chr6 13028773 G-T Hetero INTERGENIC
SBS Chr6 16749332 A-G Hetero INTERGENIC
SBS Chr6 18326637 C-T Hetero INTERGENIC
SBS Chr6 18326638 G-T Hetero INTERGENIC
SBS Chr6 18326646 C-T Hetero INTERGENIC
SBS Chr6 20929068 A-G Homo INTERGENIC
SBS Chr6 27215663 T-A Hetero INTERGENIC
SBS Chr6 27215665 T-A Hetero INTERGENIC
SBS Chr7 8444488 G-A Homo UTR_3_PRIME
SBS Chr7 9244512 G-A Hetero INTERGENIC
SBS Chr7 11262961 G-A Hetero INTRON
SBS Chr7 18562552 C-G Hetero INTERGENIC
SBS Chr8 1011258 G-A Homo INTERGENIC
SBS Chr8 2195976 G-C Homo INTERGENIC
SBS Chr8 3284553 G-C Hetero INTERGENIC
SBS Chr8 6367528 A-C Hetero INTERGENIC
SBS Chr8 6592480 C-T Hetero INTERGENIC
SBS Chr8 9248344 G-A Hetero INTERGENIC
SBS Chr9 7636673 C-T Hetero INTERGENIC
SBS Chr9 19315004 C-T Hetero INTERGENIC
SBS Chr10 2234203 G-A Hetero INTERGENIC
SBS Chr10 19107878 G-A Hetero INTRON
SBS Chr10 22080898 C-A Homo INTERGENIC
SBS Chr11 2448912 T-A Hetero INTERGENIC
SBS Chr11 7213893 G-A Hetero INTRON
SBS Chr11 7791904 A-T Hetero INTERGENIC
SBS Chr11 9681007 G-A Hetero INTERGENIC
SBS Chr11 12977243 C-T Hetero INTERGENIC
SBS Chr11 19588721 T-A Hetero INTRON
SBS Chr11 19588722 T-A Hetero INTRON
SBS Chr11 28983140 G-A Hetero INTERGENIC
SBS Chr12 21945911 G-A Hetero INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 2307415 2307417 2
Deletion Chr8 6253593 6253604 11
Deletion Chr7 8444323 8444325 2 OsKitaake07g091600
Deletion Chr1 9612041 9612066 25
Deletion Chr3 10092512 10092513 1
Deletion Chr11 11975959 11975970 11
Deletion Chr3 12919669 12919682 13
Deletion Chr6 13295001 13382000 86999 7
Deletion Chr2 14747241 14747245 4
Deletion Chr1 15765611 15765618 7
Deletion Chr9 16680175 16680181 6 OsKitaake09g122900
Deletion Chr10 16821546 16821554 8
Deletion Chr7 18012797 18012800 3
Deletion Chr10 18689207 18689209 2
Deletion Chr1 20309503 20309505 2
Deletion Chr11 20370333 20370343 10
Deletion Chr11 20401783 20401790 7
Deletion Chr6 20929216 20929248 32
Deletion Chr7 22837781 22837797 16
Deletion Chr6 26877923 26877929 6
Deletion Chr6 27381814 27381823 9
Deletion Chr1 42967998 42967999 1 OsKitaake01g473800

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 40532503 40532508 4
Insertion Chr2 20829521 20829524 2
Insertion Chr4 27651257 27651260 2
Insertion Chr7 25081865 25081868 2
Insertion Chr9 15923319 15923322 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 16435829 16868379

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2172117	G-T	Hetero	INTERGENIC
SBS	Chr1	27140369	G-T	Homo	INTERGENIC
SBS	Chr2	12445788	A-C	Hetero	INTERGENIC
SBS	Chr2	33429315	A-G	Hetero	INTERGENIC
SBS	Chr3	3383858	A-C	Hetero	INTERGENIC
SBS	Chr3	22177306	C-T	Hetero	INTRON
SBS	Chr3	27692465	A-G	Hetero	INTERGENIC
SBS	Chr3	29287230	C-T	Hetero	INTERGENIC
SBS	Chr4	14486774	G-A	Hetero	INTERGENIC
SBS	Chr5	20460572	G-A	Hetero	INTERGENIC
SBS	Chr6	787168	G-C	Hetero	INTERGENIC
SBS	Chr6	7499739	G-A	Hetero	INTERGENIC
SBS	Chr6	13028773	G-T	Hetero	INTERGENIC
SBS	Chr6	16749332	A-G	Hetero	INTERGENIC
SBS	Chr6	18326637	C-T	Hetero	INTERGENIC
SBS	Chr6	18326638	G-T	Hetero	INTERGENIC
SBS	Chr6	18326646	C-T	Hetero	INTERGENIC
SBS	Chr6	20929068	A-G	Homo	INTERGENIC
SBS	Chr6	27215663	T-A	Hetero	INTERGENIC
SBS	Chr6	27215665	T-A	Hetero	INTERGENIC
SBS	Chr7	8444488	G-A	Homo	UTR_3_PRIME
SBS	Chr7	9244512	G-A	Hetero	INTERGENIC
SBS	Chr7	11262961	G-A	Hetero	INTRON
SBS	Chr7	18562552	C-G	Hetero	INTERGENIC
SBS	Chr8	1011258	G-A	Homo	INTERGENIC
SBS	Chr8	2195976	G-C	Homo	INTERGENIC
SBS	Chr8	3284553	G-C	Hetero	INTERGENIC
SBS	Chr8	6367528	A-C	Hetero	INTERGENIC
SBS	Chr8	6592480	C-T	Hetero	INTERGENIC
SBS	Chr8	9248344	G-A	Hetero	INTERGENIC
SBS	Chr9	7636673	C-T	Hetero	INTERGENIC
SBS	Chr9	19315004	C-T	Hetero	INTERGENIC
SBS	Chr10	2234203	G-A	Hetero	INTERGENIC
SBS	Chr10	19107878	G-A	Hetero	INTRON
SBS	Chr10	22080898	C-A	Homo	INTERGENIC
SBS	Chr11	2448912	T-A	Hetero	INTERGENIC
SBS	Chr11	7213893	G-A	Hetero	INTRON
SBS	Chr11	7791904	A-T	Hetero	INTERGENIC
SBS	Chr11	9681007	G-A	Hetero	INTERGENIC
SBS	Chr11	12977243	C-T	Hetero	INTERGENIC
SBS	Chr11	19588721	T-A	Hetero	INTRON
SBS	Chr11	19588722	T-A	Hetero	INTRON
SBS	Chr11	28983140	G-A	Hetero	INTERGENIC
SBS	Chr12	21945911	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	2307415	2307417	2
Deletion	Chr8	6253593	6253604	11
Deletion	Chr7	8444323	8444325	2	OsKitaake07g091600
Deletion	Chr1	9612041	9612066	25
Deletion	Chr3	10092512	10092513	1
Deletion	Chr11	11975959	11975970	11
Deletion	Chr3	12919669	12919682	13
Deletion	Chr6	13295001	13382000	86999	7
Deletion	Chr2	14747241	14747245	4
Deletion	Chr1	15765611	15765618	7
Deletion	Chr9	16680175	16680181	6	OsKitaake09g122900
Deletion	Chr10	16821546	16821554	8
Deletion	Chr7	18012797	18012800	3
Deletion	Chr10	18689207	18689209	2
Deletion	Chr1	20309503	20309505	2
Deletion	Chr11	20370333	20370343	10
Deletion	Chr11	20401783	20401790	7
Deletion	Chr6	20929216	20929248	32
Deletion	Chr7	22837781	22837797	16
Deletion	Chr6	26877923	26877929	6
Deletion	Chr6	27381814	27381823	9
Deletion	Chr1	42967998	42967999	1	OsKitaake01g473800

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	16435829	16868379

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes