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Mutant Information

Mutant Name	FN2283 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2283 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 33994056 C-T Hetero INTERGENIC
SBS Chr2 37123720 G-C Hetero INTRON
SBS Chr3 9060761 G-A Homo INTERGENIC
SBS Chr3 19545167 C-A Hetero INTERGENIC
SBS Chr3 23993534 G-A Hetero INTERGENIC
SBS Chr3 29959798 A-G Hetero INTERGENIC
SBS Chr4 6219381 G-A Hetero INTERGENIC
SBS Chr4 11326777 G-C Hetero INTERGENIC
SBS Chr4 14439875 C-T Hetero INTERGENIC
SBS Chr4 28518341 G-A Hetero INTERGENIC
SBS Chr5 7541134 G-A Hetero INTERGENIC
SBS Chr5 10207099 T-C Hetero INTERGENIC
SBS Chr5 18327354 A-T Hetero INTERGENIC
SBS Chr5 19936665 G-A Hetero INTERGENIC
SBS Chr5 30087588 C-T Homo INTERGENIC
SBS Chr6 2277209 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g029300
SBS Chr6 13271650 G-C Homo INTERGENIC
SBS Chr7 6076561 T-C Hetero INTERGENIC
SBS Chr7 6154415 G-C Hetero INTERGENIC
SBS Chr7 11679020 T-C Hetero INTERGENIC
SBS Chr7 11679021 A-C Hetero INTERGENIC
SBS Chr7 18619926 T-C Hetero INTERGENIC
SBS Chr7 21351447 C-T Hetero INTERGENIC
SBS Chr8 17809363 G-A Hetero SYNONYMOUS_CODING
SBS Chr8 18215900 C-T Hetero INTERGENIC
SBS Chr9 2640414 C-T Hetero INTERGENIC
SBS Chr9 5188666 G-T Hetero INTERGENIC
SBS Chr9 5399641 G-T Homo INTRON
SBS Chr9 14459657 G-A Homo INTERGENIC
SBS Chr10 1359301 G-A Homo INTERGENIC
SBS Chr10 9753994 T-G Homo INTERGENIC
SBS Chr10 13054390 T-C Hetero INTERGENIC
SBS Chr10 17894136 C-T Hetero INTERGENIC
SBS Chr11 3897621 A-G Hetero INTERGENIC
SBS Chr11 11796137 G-A Hetero INTERGENIC
SBS Chr11 12811654 T-C Hetero INTERGENIC
SBS Chr11 17377048 A-C Hetero INTERGENIC
SBS Chr12 6014287 G-C Homo INTERGENIC
SBS Chr12 7131939 A-G Homo INTERGENIC
SBS Chr12 9860332 G-T Homo INTERGENIC
SBS Chr12 21663046 G-A Hetero INTERGENIC
SBS Chr12 22725445 T-C Hetero INTERGENIC
SBS Chr12 23711152 C-G Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1746036 1746062 26
Deletion Chr7 2504327 2504336 9
Deletion Chr4 2799861 2799871 10
Deletion Chr4 3926162 3926170 8
Deletion Chr3 7584507 7584514 7
Deletion Chr5 8312327 8312329 2
Deletion Chr10 8317380 8317396 16
Deletion Chr3 12658972 12658973 1
Deletion Chr11 13202241 13202243 2
Deletion Chr8 17641914 17641917 3
Deletion Chr5 18081378 18081383 5
Deletion Chr7 21238859 21238864 5
Deletion Chr5 22924826 22924829 3
Deletion Chr10 23088285 23088286 1
Deletion Chr12 25867542 25867548 6
Deletion Chr12 26746001 26865000 118999 20
Deletion Chr6 30624291 30624299 8
Deletion Chr2 33060456 33060458 2
Deletion Chr4 36463062 36463065 3
Deletion Chr1 37141666 37141668 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 6328712 6328716 3
Insertion Chr6 6466585 6466588 2
Insertion Chr7 18945943 18945945 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 11841020 11852343 OsKitaake02g135300
Inversion Chr2 11841025 11852340 OsKitaake02g135300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	33994056	C-T	Hetero	INTERGENIC
SBS	Chr2	37123720	G-C	Hetero	INTRON
SBS	Chr3	9060761	G-A	Homo	INTERGENIC
SBS	Chr3	19545167	C-A	Hetero	INTERGENIC
SBS	Chr3	23993534	G-A	Hetero	INTERGENIC
SBS	Chr3	29959798	A-G	Hetero	INTERGENIC
SBS	Chr4	6219381	G-A	Hetero	INTERGENIC
SBS	Chr4	11326777	G-C	Hetero	INTERGENIC
SBS	Chr4	14439875	C-T	Hetero	INTERGENIC
SBS	Chr4	28518341	G-A	Hetero	INTERGENIC
SBS	Chr5	7541134	G-A	Hetero	INTERGENIC
SBS	Chr5	10207099	T-C	Hetero	INTERGENIC
SBS	Chr5	18327354	A-T	Hetero	INTERGENIC
SBS	Chr5	19936665	G-A	Hetero	INTERGENIC
SBS	Chr5	30087588	C-T	Homo	INTERGENIC
SBS	Chr6	2277209	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g029300
SBS	Chr6	13271650	G-C	Homo	INTERGENIC
SBS	Chr7	6076561	T-C	Hetero	INTERGENIC
SBS	Chr7	6154415	G-C	Hetero	INTERGENIC
SBS	Chr7	11679020	T-C	Hetero	INTERGENIC
SBS	Chr7	11679021	A-C	Hetero	INTERGENIC
SBS	Chr7	18619926	T-C	Hetero	INTERGENIC
SBS	Chr7	21351447	C-T	Hetero	INTERGENIC
SBS	Chr8	17809363	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr8	18215900	C-T	Hetero	INTERGENIC
SBS	Chr9	2640414	C-T	Hetero	INTERGENIC
SBS	Chr9	5188666	G-T	Hetero	INTERGENIC
SBS	Chr9	5399641	G-T	Homo	INTRON
SBS	Chr9	14459657	G-A	Homo	INTERGENIC
SBS	Chr10	1359301	G-A	Homo	INTERGENIC
SBS	Chr10	9753994	T-G	Homo	INTERGENIC
SBS	Chr10	13054390	T-C	Hetero	INTERGENIC
SBS	Chr10	17894136	C-T	Hetero	INTERGENIC
SBS	Chr11	3897621	A-G	Hetero	INTERGENIC
SBS	Chr11	11796137	G-A	Hetero	INTERGENIC
SBS	Chr11	12811654	T-C	Hetero	INTERGENIC
SBS	Chr11	17377048	A-C	Hetero	INTERGENIC
SBS	Chr12	6014287	G-C	Homo	INTERGENIC
SBS	Chr12	7131939	A-G	Homo	INTERGENIC
SBS	Chr12	9860332	G-T	Homo	INTERGENIC
SBS	Chr12	21663046	G-A	Hetero	INTERGENIC
SBS	Chr12	22725445	T-C	Hetero	INTERGENIC
SBS	Chr12	23711152	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1746036	1746062	26
Deletion	Chr7	2504327	2504336	9
Deletion	Chr4	2799861	2799871	10
Deletion	Chr4	3926162	3926170	8
Deletion	Chr3	7584507	7584514	7
Deletion	Chr5	8312327	8312329	2
Deletion	Chr10	8317380	8317396	16
Deletion	Chr3	12658972	12658973	1
Deletion	Chr11	13202241	13202243	2
Deletion	Chr8	17641914	17641917	3
Deletion	Chr5	18081378	18081383	5
Deletion	Chr7	21238859	21238864	5
Deletion	Chr5	22924826	22924829	3
Deletion	Chr10	23088285	23088286	1
Deletion	Chr12	25867542	25867548	6
Deletion	Chr12	26746001	26865000	118999	20
Deletion	Chr6	30624291	30624299	8
Deletion	Chr2	33060456	33060458	2
Deletion	Chr4	36463062	36463065	3
Deletion	Chr1	37141666	37141668	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	11841020	11852343	OsKitaake02g135300
Inversion	Chr2	11841025	11852340	OsKitaake02g135300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes