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Mutant Information

Mutant Name	FN2284 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2284 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 41492088 T-C Hetero INTERGENIC
SBS Chr2 5587867 G-A Hetero INTERGENIC
SBS Chr2 8603197 C-T Hetero INTERGENIC
SBS Chr2 13259804 G-A Hetero INTERGENIC
SBS Chr2 34487112 C-T Homo NON_SYNONYMOUS_CODING OsKitaake02g358700
SBS Chr3 3079027 T-C Homo INTERGENIC
SBS Chr3 5027757 A-T Hetero INTERGENIC
SBS Chr3 11360153 A-T Hetero INTERGENIC
SBS Chr3 20283646 G-A Hetero INTERGENIC
SBS Chr3 29022742 G-A Homo INTERGENIC
SBS Chr4 1322974 G-A Hetero INTERGENIC
SBS Chr4 11277112 G-T Hetero INTERGENIC
SBS Chr4 18255182 C-A Hetero INTERGENIC
SBS Chr4 29231183 A-T Hetero INTERGENIC
SBS Chr4 29231184 T-G Hetero INTERGENIC
SBS Chr4 29231185 C-T Hetero INTERGENIC
SBS Chr4 30541947 G-A Hetero INTERGENIC
SBS Chr4 34566134 A-G Hetero INTRON
SBS Chr5 455358 C-T Hetero INTERGENIC
SBS Chr5 4946463 A-T Hetero INTERGENIC
SBS Chr5 8510953 A-C Hetero INTERGENIC
SBS Chr5 18778009 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g146400
SBS Chr5 21251435 G-A Hetero INTRON
SBS Chr6 4179750 C-T Hetero INTERGENIC
SBS Chr7 13329803 C-T Hetero INTERGENIC
SBS Chr7 17315413 A-T Hetero INTERGENIC
SBS Chr7 17315416 A-T Hetero INTERGENIC
SBS Chr7 17539309 C-G Hetero INTERGENIC
SBS Chr7 21728248 G-C Hetero INTRON
SBS Chr9 2190334 C-T Hetero INTERGENIC
SBS Chr9 7299763 C-T Hetero INTERGENIC
SBS Chr9 12793389 A-G Hetero INTERGENIC
SBS Chr9 22339965 G-T Hetero STOP_GAINED OsKitaake09g202500
SBS Chr10 11288599 C-G Hetero INTERGENIC
SBS Chr10 11754561 C-T Hetero INTERGENIC
SBS Chr10 15660114 T-A Hetero INTERGENIC
SBS Chr11 14402449 G-A Homo INTERGENIC
SBS Chr12 1812112 T-G Hetero INTERGENIC
SBS Chr12 4346546 T-C Hetero SYNONYMOUS_CODING
SBS Chr12 5686956 T-C Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 1082767 1082780 13
Deletion Chr11 4003257 4003258 1
Deletion Chr3 7099945 7099957 12
Deletion Chr4 8172562 8172564 2
Deletion Chr12 9199376 9199378 2
Deletion Chr1 10350843 10350848 5
Deletion Chr1 11185040 11185048 8
Deletion Chr6 14757001 14775000 17999
Deletion Chr11 16429698 16429780 82
Deletion Chr10 19191482 19191495 13
Deletion Chr12 22082256 22082259 3
Deletion Chr4 34585001 34594000 8999 2
Deletion Chr2 35902269 35902279 10

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 18676394 18676397 2
Insertion Chr5 17365612 17365615 2
Insertion Chr7 24634435 24634439 3
Insertion Chr12 21253472 21253475 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 26053105 26216660
Inversion Chr5 26053106 26216659
Inversion Chr4 33953023 34585222 2
Inversion Chr4 33953034 34594193 OsKitaake04g282900

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 12482476 Chr3 15674152 OsKitaake03g201200
Translocation Chr9 12552571 Chr3 15674165 2
Translocation Chr2 22228971 Chr1 7916383

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	41492088	T-C	Hetero	INTERGENIC
SBS	Chr2	5587867	G-A	Hetero	INTERGENIC
SBS	Chr2	8603197	C-T	Hetero	INTERGENIC
SBS	Chr2	13259804	G-A	Hetero	INTERGENIC
SBS	Chr2	34487112	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g358700
SBS	Chr3	3079027	T-C	Homo	INTERGENIC
SBS	Chr3	5027757	A-T	Hetero	INTERGENIC
SBS	Chr3	11360153	A-T	Hetero	INTERGENIC
SBS	Chr3	20283646	G-A	Hetero	INTERGENIC
SBS	Chr3	29022742	G-A	Homo	INTERGENIC
SBS	Chr4	1322974	G-A	Hetero	INTERGENIC
SBS	Chr4	11277112	G-T	Hetero	INTERGENIC
SBS	Chr4	18255182	C-A	Hetero	INTERGENIC
SBS	Chr4	29231183	A-T	Hetero	INTERGENIC
SBS	Chr4	29231184	T-G	Hetero	INTERGENIC
SBS	Chr4	29231185	C-T	Hetero	INTERGENIC
SBS	Chr4	30541947	G-A	Hetero	INTERGENIC
SBS	Chr4	34566134	A-G	Hetero	INTRON
SBS	Chr5	455358	C-T	Hetero	INTERGENIC
SBS	Chr5	4946463	A-T	Hetero	INTERGENIC
SBS	Chr5	8510953	A-C	Hetero	INTERGENIC
SBS	Chr5	18778009	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g146400
SBS	Chr5	21251435	G-A	Hetero	INTRON
SBS	Chr6	4179750	C-T	Hetero	INTERGENIC
SBS	Chr7	13329803	C-T	Hetero	INTERGENIC
SBS	Chr7	17315413	A-T	Hetero	INTERGENIC
SBS	Chr7	17315416	A-T	Hetero	INTERGENIC
SBS	Chr7	17539309	C-G	Hetero	INTERGENIC
SBS	Chr7	21728248	G-C	Hetero	INTRON
SBS	Chr9	2190334	C-T	Hetero	INTERGENIC
SBS	Chr9	7299763	C-T	Hetero	INTERGENIC
SBS	Chr9	12793389	A-G	Hetero	INTERGENIC
SBS	Chr9	22339965	G-T	Hetero	STOP_GAINED	OsKitaake09g202500
SBS	Chr10	11288599	C-G	Hetero	INTERGENIC
SBS	Chr10	11754561	C-T	Hetero	INTERGENIC
SBS	Chr10	15660114	T-A	Hetero	INTERGENIC
SBS	Chr11	14402449	G-A	Homo	INTERGENIC
SBS	Chr12	1812112	T-G	Hetero	INTERGENIC
SBS	Chr12	4346546	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr12	5686956	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	1082767	1082780	13
Deletion	Chr11	4003257	4003258	1
Deletion	Chr3	7099945	7099957	12
Deletion	Chr4	8172562	8172564	2
Deletion	Chr12	9199376	9199378	2
Deletion	Chr1	10350843	10350848	5
Deletion	Chr1	11185040	11185048	8
Deletion	Chr6	14757001	14775000	17999
Deletion	Chr11	16429698	16429780	82
Deletion	Chr10	19191482	19191495	13
Deletion	Chr12	22082256	22082259	3
Deletion	Chr4	34585001	34594000	8999	2
Deletion	Chr2	35902269	35902279	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	26053105	26216660
Inversion	Chr5	26053106	26216659
Inversion	Chr4	33953023	34585222	2
Inversion	Chr4	33953034	34594193	OsKitaake04g282900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes