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| Mutant Information |
|---|
| Mutant Name | FN2285 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2285 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 16897538 | C-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g178500 |
| SBS | Chr1 | 23700989 | T-A | Homo | INTERGENIC | |
| SBS | Chr1 | 25152529 | C-A | Homo | INTERGENIC | |
| SBS | Chr1 | 29404849 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 33606210 | A-G | Homo | INTRON | |
| SBS | Chr2 | 7577392 | G-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 16636548 | A-T | Homo | INTERGENIC | |
| SBS | Chr2 | 25523346 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 29910796 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 9802567 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 21073759 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 32548525 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 18131981 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 18131982 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 22160773 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 22160774 | A-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 23443927 | A-T | Hetero | INTRON | |
| SBS | Chr4 | 35724472 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g305200 |
| SBS | Chr5 | 9301402 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 27601136 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 1584021 | T-C | Homo | INTERGENIC | |
| SBS | Chr7 | 6073648 | T-C | Homo | INTERGENIC | |
| SBS | Chr7 | 23445236 | G-C | Homo | INTERGENIC | |
| SBS | Chr7 | 25087751 | T-G | Homo | INTERGENIC | |
| SBS | Chr9 | 17590774 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr9 | 17590775 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr11 | 2157646 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 2665815 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g038100 |
| SBS | Chr11 | 4546674 | A-T | Hetero | INTRON | |
| SBS | Chr11 | 12287774 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 22806032 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 17508947 | A-G | Hetero | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 3857906 | 3857914 | 8 | |
| Deletion | Chr7 | 5098592 | 5098597 | 5 | |
| Deletion | Chr10 | 14902437 | 14902447 | 10 | |
| Deletion | Chr1 | 15136073 | 15136090 | 17 | OsKitaake01g144000 |
| Deletion | Chr3 | 16870948 | 16870953 | 5 | |
| Deletion | Chr9 | 20561715 | 20561716 | 1 | OsKitaake09g173900 |
| Deletion | Chr4 | 22273493 | 22273495 | 2 | |
| Deletion | Chr11 | 24249950 | 24249955 | 5 | |
| Deletion | Chr1 | 33711099 | 33711101 | 2 | |
| Deletion | Chr1 | 39608619 | 39608623 | 4 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 1220540 | 1220544 | 3 | |
| Insertion | Chr10 | 16315795 | 16315798 | 2 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 3681422 | 3945188 | |
| Inversion | Chr11 | 3681430 | 3945201 | |
| Inversion | Chr2 | 27810904 | 27817594 | OsKitaake02g279800 |
| Inversion | Chr2 | 27810980 | 27818203 | OsKitaake02g279800 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr3 | 24887339 | Chr2 | 27817596 | 2 |
| Translocation | Chr3 | 24887342 | Chr2 | 27818193 | 2 |