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| Mutant Information |
|---|
| Mutant Name | FN2286 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2286 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 38
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 16878795 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 25270690 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 18736495 | A-C | Homo | INTERGENIC | |
| SBS | Chr2 | 20625971 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 26545387 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 26545388 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 4093023 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 12961563 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 23511412 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 1691459 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 26059832 | C-A | Hetero | UTR_3_PRIME | |
| SBS | Chr5 | 778432 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 4967620 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 8153464 | T-A | Homo | INTRON | |
| SBS | Chr5 | 8153465 | G-T | Homo | INTRON | |
| SBS | Chr5 | 9678430 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 12825282 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 29982647 | G-T | Homo | INTERGENIC | |
| SBS | Chr6 | 18622191 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 22816362 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 13694710 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 14127473 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 19740245 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 22478299 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 8184810 | T-C | Homo | INTERGENIC | |
| SBS | Chr8 | 22667425 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 22809954 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 23715792 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 8587775 | T-A | Homo | INTRON | |
| SBS | Chr9 | 11174630 | T-A | Homo | INTRON | |
| SBS | Chr9 | 15067296 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 19022825 | C-T | Hetero | INTRON | |
| SBS | Chr10 | 3608490 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake10g026900 |
| SBS | Chr10 | 3608491 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr10 | 8980340 | T-A | Homo | INTERGENIC | |
| SBS | Chr10 | 22664083 | A-C | Homo | INTRON | |
| SBS | Chr11 | 15589157 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 19426662 | G-C | Homo | INTERGENIC |
Deletions: 20
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 7628625 | 7628627 | 2 | |
| Deletion | Chr12 | 8553157 | 8553160 | 3 | |
| Deletion | Chr9 | 8611497 | 8611498 | 1 | |
| Deletion | Chr9 | 8637507 | 8637514 | 7 | |
| Deletion | Chr4 | 10062895 | 10062896 | 1 | |
| Deletion | Chr9 | 11224048 | 11224052 | 4 | |
| Deletion | Chr1 | 12813536 | 12813537 | 1 | |
| Deletion | Chr8 | 14777429 | 14777430 | 1 | |
| Deletion | Chr4 | 17152093 | 17152103 | 10 | |
| Deletion | Chr2 | 17941762 | 17941767 | 5 | |
| Deletion | Chr2 | 18665387 | 18665393 | 6 | |
| Deletion | Chr2 | 18834380 | 18834381 | 1 | |
| Deletion | Chr1 | 21736433 | 21736434 | 1 | |
| Deletion | Chr5 | 24771897 | 24771904 | 7 | |
| Deletion | Chr11 | 26105581 | 26105589 | 8 | OsKitaake11g210900 |
| Deletion | Chr5 | 28597429 | 28597432 | 3 | |
| Deletion | Chr3 | 31393260 | 31393266 | 6 | |
| Deletion | Chr2 | 34667840 | 34667848 | 8 | OsKitaake02g361300 |
| Deletion | Chr3 | 34861804 | 34861805 | 1 | |
| Deletion | Chr1 | 40335369 | 40335377 | 8 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 8300886 | 8300889 | 2 | |
| Insertion | Chr4 | 5632956 | 5632958 | 1 | |
| Insertion | Chr8 | 25598633 | 25598636 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 6034591 | 6042233 |