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| Mutant Information |
|---|
| Mutant Name | FN2288 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2288 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 23
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 9754838 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 29328313 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 19233366 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 16741562 | C-T | Homo | UTR_5_PRIME | |
| SBS | Chr5 | 290507 | A-C | Hetero | INTRON | |
| SBS | Chr5 | 26400582 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 14382723 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 21281651 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 30165032 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 10729494 | G-C | Homo | UTR_5_PRIME | |
| SBS | Chr7 | 19416301 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 22115945 | A-G | Homo | INTERGENIC | |
| SBS | Chr7 | 25392074 | T-G | Hetero | INTRON | |
| SBS | Chr8 | 3954690 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 4972422 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 8882874 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 8920788 | G-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 17719012 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 18214964 | G-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 20755803 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 20189879 | T-A | Hetero | INTRON | |
| SBS | Chr11 | 10124322 | T-A | Hetero | INTRON | |
| SBS | Chr12 | 8473733 | G-A | Homo | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 3381769 | 3381770 | 1 | |
| Deletion | Chr7 | 6246599 | 6246602 | 3 | |
| Deletion | Chr7 | 7364137 | 7364149 | 12 | |
| Deletion | Chr1 | 11995698 | 11995706 | 8 | |
| Deletion | Chr11 | 14475001 | 14504000 | 28999 | 2 |
| Deletion | Chr12 | 15329994 | 15329996 | 2 | |
| Deletion | Chr4 | 18459299 | 18459315 | 16 | |
| Deletion | Chr12 | 23049001 | 23187000 | 137999 | 21 |
| Deletion | Chr5 | 26536279 | 26536281 | 2 | OsKitaake05g235900 |
| Deletion | Chr3 | 33110001 | 33332000 | 221999 | 30 |
| Deletion | Chr3 | 33337001 | 33582000 | 244999 | 41 |
| Deletion | Chr1 | 38463676 | 38463678 | 2 | OsKitaake01g410800 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 36493168 | 36493171 | 2 | |
| Insertion | Chr5 | 3151422 | 3151425 | 2 | |
| Insertion | Chr7 | 3076025 | 3076028 | 2 | |
| Insertion | Chr5 | 30012903 | 30012905 | 1 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 10934432 | 11596987 | OsKitaake11g106000 |
| Inversion | Chr11 | 20013821 | 20558908 | 2 |
| Inversion | Chr11 | 20013841 | 20558917 | 2 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 10933934 | Chr6 | 25838723 | OsKitaake11g106000 |
| Translocation | Chr11 | 10934340 | Chr9 | 1014666 | 2 |
| Translocation | Chr11 | 11933445 | Chr4 | 35588242 | |
| Translocation | Chr11 | 11937386 | Chr4 | 35468855 | |
| Translocation | Chr7 | 25390016 | Chr4 | 35468511 |