Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN2289 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2289 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 35
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 12382882 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 7300269 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 11978399 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 26897118 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 2297084 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 2297087 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 6961056 | A-G | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr3 | 9771031 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 9817296 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 22570710 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 2715453 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 9134022 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 3809366 | A-G | Hetero | INTRON | |
| SBS | Chr5 | 6360197 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 7933099 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 11154093 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 16901266 | G-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 5973309 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 1432711 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 3952675 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 12392661 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 20600655 | T-A | Homo | INTERGENIC | |
| SBS | Chr9 | 8578803 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 10103039 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 11135993 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 13857253 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 14403728 | A-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 3390214 | C-G | Homo | INTERGENIC | |
| SBS | Chr10 | 8117590 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 8021443 | T-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 19460310 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 29299225 | A-T | Homo | INTERGENIC | |
| SBS | Chr12 | 5678440 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 12191201 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 22073846 | A-G | Hetero | INTERGENIC |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 897421 | 897423 | 2 | |
| Deletion | Chr8 | 3426705 | 3426709 | 4 | |
| Deletion | Chr12 | 4967233 | 4967239 | 6 | OsKitaake12g063800 |
| Deletion | Chr7 | 5232941 | 5232942 | 1 | |
| Deletion | Chr12 | 5744668 | 5744672 | 4 | |
| Deletion | Chr1 | 7696792 | 7696794 | 2 | |
| Deletion | Chr8 | 9477398 | 9477404 | 6 | |
| Deletion | Chr8 | 13697333 | 13697336 | 3 | |
| Deletion | Chr9 | 14677001 | 14740000 | 62999 | 5 |
| Deletion | Chr9 | 14746001 | 14841000 | 94999 | 8 |
| Deletion | Chr5 | 17502753 | 17502756 | 3 | |
| Deletion | Chr9 | 17933652 | 17933655 | 3 | |
| Deletion | Chr7 | 18299505 | 18299508 | 3 | OsKitaake07g148000 |
| Deletion | Chr6 | 20350953 | 20350954 | 1 | OsKitaake06g181900 |
| Deletion | Chr9 | 21170354 | 21170356 | 2 | |
| Deletion | Chr12 | 26512277 | 26512278 | 1 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 37466102 | 37466105 | 2 | |
| Insertion | Chr5 | 3397938 | 3397941 | 2 | |
| Insertion | Chr12 | 18884482 | 18884485 | 2 | |
| Insertion | Chr12 | 25899502 | 25899505 | 2 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 18534914 | Chr4 | 9281495 | OsKitaake04g048000 |
| Translocation | Chr12 | 26051528 | Chr9 | 13824913 | |
| Translocation | Chr12 | 26085039 | Chr9 | 13824902 |