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Mutant Information

Mutant Name	FN229-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN229-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 53

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9115651 T-A Hetero INTERGENIC
SBS Chr1 11111403 C-A Homo INTRON
SBS Chr1 20465660 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g200200
SBS Chr1 20465662 G-A Hetero SYNONYMOUS_CODING
SBS Chr1 24298476 G-A Homo UTR_3_PRIME
SBS Chr1 26219368 G-A Homo INTERGENIC
SBS Chr1 37349005 A-T Homo INTERGENIC
SBS Chr2 7274612 T-G Hetero INTERGENIC
SBS Chr2 7413280 C-A Hetero INTERGENIC
SBS Chr2 10604205 C-T Hetero INTERGENIC
SBS Chr2 18517635 C-A Homo INTERGENIC
SBS Chr2 34559817 T-A Homo INTERGENIC
SBS Chr3 1707893 C-T Hetero INTERGENIC
SBS Chr3 3319084 A-T Hetero INTERGENIC
SBS Chr3 6864286 C-A Hetero INTERGENIC
SBS Chr3 6864291 C-T Hetero INTERGENIC
SBS Chr3 15745456 T-C Hetero INTERGENIC
SBS Chr3 17143823 C-T Homo INTERGENIC
SBS Chr3 19294675 C-T Hetero INTERGENIC
SBS Chr4 6456797 T-A Hetero INTERGENIC
SBS Chr4 7255406 C-A Hetero INTRON
SBS Chr4 9964247 T-C Hetero INTERGENIC
SBS Chr4 10913554 G-C Hetero INTERGENIC
SBS Chr4 15498697 A-G Hetero INTERGENIC
SBS Chr4 15498707 G-A Hetero INTERGENIC
SBS Chr4 18116792 C-T Hetero INTERGENIC
SBS Chr5 604894 G-A Hetero INTRON
SBS Chr5 718594 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g008300
SBS Chr5 9334494 G-C Homo NON_SYNONYMOUS_CODING OsKitaake05g086800
SBS Chr5 13287971 C-G Hetero INTERGENIC
SBS Chr5 18417087 C-T Homo INTERGENIC
SBS Chr5 21301744 C-A Hetero INTERGENIC
SBS Chr6 12814930 C-T Hetero INTERGENIC
SBS Chr6 18747607 A-G Hetero INTERGENIC
SBS Chr7 5430027 A-G Hetero INTRON
SBS Chr7 13992092 T-C Homo INTERGENIC
SBS Chr7 20546975 A-T Homo INTERGENIC
SBS Chr8 2918620 C-T Hetero INTRON
SBS Chr8 3164396 T-A Hetero INTERGENIC
SBS Chr8 3164397 T-A Hetero INTERGENIC
SBS Chr8 7688767 T-C Hetero INTERGENIC
SBS Chr8 26988015 C-T Homo INTERGENIC
SBS Chr8 28301119 C-T Hetero INTERGENIC
SBS Chr9 4482225 C-G Homo INTERGENIC
SBS Chr9 5562300 C-A Homo INTERGENIC
SBS Chr9 11240601 T-C Hetero INTERGENIC
SBS Chr10 9203573 T-C Homo INTERGENIC
SBS Chr11 1168198 C-G Hetero INTERGENIC
SBS Chr11 24826208 T-C Hetero INTERGENIC
SBS Chr11 27093500 C-A Hetero INTERGENIC
SBS Chr12 16054816 C-T Homo INTERGENIC
SBS Chr12 16054817 C-T Homo INTERGENIC
SBS Chr12 25579087 G-T Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 391145 391157 12
Deletion Chr12 1468995 1469002 7
Deletion Chr2 2105389 2105391 2
Deletion Chr4 2645001 2691000 45999 OsKitaake04g015800
Deletion Chr4 3266001 3753000 486999 13
Deletion Chr4 3955001 5043000 1087999 46
Deletion Chr2 4444256 4444258 2
Deletion Chr4 5048001 5098000 49999 3
Deletion Chr1 5535001 5549000 13999 2
Deletion Chr1 5726084 5726096 12
Deletion Chr12 8411430 8411433 3
Deletion Chr6 14027001 14056000 28999 OsKitaake06g146400
Deletion Chr2 18613971 18613972 1
Deletion Chr1 20399653 20399655 2
Deletion Chr7 20438001 20550000 111999 5
Deletion Chr7 20799776 20799777 1
Deletion Chr5 23342413 23342415 2
Deletion Chr2 28273900 28273906 6
Deletion Chr1 30997238 30997240 2 OsKitaake01g308800

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 10975182 10975185 2
Insertion Chr7 15020501 15020504 2
Insertion Chr11 18578308 18578311 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 20386214 20438198
Inversion Chr7 20386224 20550180
Inversion Chr7 20531021 20550174
Inversion Chr1 21324503 21421828 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 4766809 Chr1 5535854 2
Translocation Chr7 20499453 Chr6 4766832 OsKitaake06g064701
Translocation Chr7 20545697 Chr3 8411868
Translocation Chr7 20546918 Chr1 5535608 OsKitaake01g071300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9115651	T-A	Hetero	INTERGENIC
SBS	Chr1	11111403	C-A	Homo	INTRON
SBS	Chr1	20465660	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g200200
SBS	Chr1	20465662	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	24298476	G-A	Homo	UTR_3_PRIME
SBS	Chr1	26219368	G-A	Homo	INTERGENIC
SBS	Chr1	37349005	A-T	Homo	INTERGENIC
SBS	Chr2	7274612	T-G	Hetero	INTERGENIC
SBS	Chr2	7413280	C-A	Hetero	INTERGENIC
SBS	Chr2	10604205	C-T	Hetero	INTERGENIC
SBS	Chr2	18517635	C-A	Homo	INTERGENIC
SBS	Chr2	34559817	T-A	Homo	INTERGENIC
SBS	Chr3	1707893	C-T	Hetero	INTERGENIC
SBS	Chr3	3319084	A-T	Hetero	INTERGENIC
SBS	Chr3	6864286	C-A	Hetero	INTERGENIC
SBS	Chr3	6864291	C-T	Hetero	INTERGENIC
SBS	Chr3	15745456	T-C	Hetero	INTERGENIC
SBS	Chr3	17143823	C-T	Homo	INTERGENIC
SBS	Chr3	19294675	C-T	Hetero	INTERGENIC
SBS	Chr4	6456797	T-A	Hetero	INTERGENIC
SBS	Chr4	7255406	C-A	Hetero	INTRON
SBS	Chr4	9964247	T-C	Hetero	INTERGENIC
SBS	Chr4	10913554	G-C	Hetero	INTERGENIC
SBS	Chr4	15498697	A-G	Hetero	INTERGENIC
SBS	Chr4	15498707	G-A	Hetero	INTERGENIC
SBS	Chr4	18116792	C-T	Hetero	INTERGENIC
SBS	Chr5	604894	G-A	Hetero	INTRON
SBS	Chr5	718594	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g008300
SBS	Chr5	9334494	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g086800
SBS	Chr5	13287971	C-G	Hetero	INTERGENIC
SBS	Chr5	18417087	C-T	Homo	INTERGENIC
SBS	Chr5	21301744	C-A	Hetero	INTERGENIC
SBS	Chr6	12814930	C-T	Hetero	INTERGENIC
SBS	Chr6	18747607	A-G	Hetero	INTERGENIC
SBS	Chr7	5430027	A-G	Hetero	INTRON
SBS	Chr7	13992092	T-C	Homo	INTERGENIC
SBS	Chr7	20546975	A-T	Homo	INTERGENIC
SBS	Chr8	2918620	C-T	Hetero	INTRON
SBS	Chr8	3164396	T-A	Hetero	INTERGENIC
SBS	Chr8	3164397	T-A	Hetero	INTERGENIC
SBS	Chr8	7688767	T-C	Hetero	INTERGENIC
SBS	Chr8	26988015	C-T	Homo	INTERGENIC
SBS	Chr8	28301119	C-T	Hetero	INTERGENIC
SBS	Chr9	4482225	C-G	Homo	INTERGENIC
SBS	Chr9	5562300	C-A	Homo	INTERGENIC
SBS	Chr9	11240601	T-C	Hetero	INTERGENIC
SBS	Chr10	9203573	T-C	Homo	INTERGENIC
SBS	Chr11	1168198	C-G	Hetero	INTERGENIC
SBS	Chr11	24826208	T-C	Hetero	INTERGENIC
SBS	Chr11	27093500	C-A	Hetero	INTERGENIC
SBS	Chr12	16054816	C-T	Homo	INTERGENIC
SBS	Chr12	16054817	C-T	Homo	INTERGENIC
SBS	Chr12	25579087	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	391145	391157	12
Deletion	Chr12	1468995	1469002	7
Deletion	Chr2	2105389	2105391	2
Deletion	Chr4	2645001	2691000	45999	OsKitaake04g015800
Deletion	Chr4	3266001	3753000	486999	13
Deletion	Chr4	3955001	5043000	1087999	46
Deletion	Chr2	4444256	4444258	2
Deletion	Chr4	5048001	5098000	49999	3
Deletion	Chr1	5535001	5549000	13999	2
Deletion	Chr1	5726084	5726096	12
Deletion	Chr12	8411430	8411433	3
Deletion	Chr6	14027001	14056000	28999	OsKitaake06g146400
Deletion	Chr2	18613971	18613972	1
Deletion	Chr1	20399653	20399655	2
Deletion	Chr7	20438001	20550000	111999	5
Deletion	Chr7	20799776	20799777	1
Deletion	Chr5	23342413	23342415	2
Deletion	Chr2	28273900	28273906	6
Deletion	Chr1	30997238	30997240	2	OsKitaake01g308800

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	20386214	20438198
Inversion	Chr7	20386224	20550180
Inversion	Chr7	20531021	20550174
Inversion	Chr1	21324503	21421828	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes