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Mutant Information

Mutant Name	FN2290 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2290 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11853505 G-A Homo UTR_5_PRIME
SBS Chr2 3268005 G-A Hetero INTRON
SBS Chr2 14616599 G-A Homo INTERGENIC
SBS Chr2 15956313 C-T Homo INTERGENIC
SBS Chr2 25850709 G-C Homo INTERGENIC
SBS Chr2 33733728 C-T Hetero INTRON
SBS Chr3 6765955 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g096000
SBS Chr3 14301478 A-T Hetero INTERGENIC
SBS Chr3 16149037 T-A Hetero INTRON
SBS Chr3 33592475 G-A Homo INTERGENIC
SBS Chr5 6933605 C-T Hetero INTERGENIC
SBS Chr5 9993825 A-G Hetero INTERGENIC
SBS Chr5 22398378 C-A Hetero UTR_5_PRIME
SBS Chr6 16639254 C-T Hetero UTR_3_PRIME
SBS Chr7 18796 A-T Hetero INTERGENIC
SBS Chr7 5012871 C-T Hetero SYNONYMOUS_CODING
SBS Chr7 6392636 C-T Hetero INTERGENIC
SBS Chr7 20420524 C-T Hetero INTERGENIC
SBS Chr7 23420160 T-A Hetero INTERGENIC
SBS Chr8 14062370 G-A Hetero INTERGENIC
SBS Chr8 28802837 G-A Hetero INTRON
SBS Chr9 1214016 C-T Homo UTR_5_PRIME
SBS Chr9 11267658 T-G Hetero INTERGENIC
SBS Chr10 1828189 G-A Homo INTRON
SBS Chr10 1828190 C-T Homo INTRON
SBS Chr10 1828191 C-T Homo INTRON
SBS Chr11 2984179 C-T Homo INTERGENIC
SBS Chr11 17896573 G-A Hetero INTERGENIC
SBS Chr11 20336126 A-G Hetero SYNONYMOUS_CODING
SBS Chr11 23128481 A-G Hetero INTERGENIC
SBS Chr11 23690503 G-C Hetero INTERGENIC
SBS Chr12 6145986 G-T Homo INTERGENIC
SBS Chr12 24970754 A-G Homo INTRON

Deletions: 26

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 946080 946082 2
Deletion Chr4 5817257 5817273 16
Deletion Chr8 6008689 6008690 1
Deletion Chr5 6941277 6941279 2
Deletion Chr5 7473866 7473867 1
Deletion Chr1 9114981 9114982 1
Deletion Chr11 9656891 9656896 5
Deletion Chr8 9704728 9704739 11
Deletion Chr9 10641457 10641465 8
Deletion Chr12 10678995 10678998 3
Deletion Chr5 13606945 13606963 18
Deletion Chr9 14667577 14667580 3
Deletion Chr3 15795714 15795734 20
Deletion Chr5 16272089 16272091 2
Deletion Chr7 16317798 16317805 7
Deletion Chr10 16809080 16809081 1
Deletion Chr7 17096613 17096619 6
Deletion Chr11 17831256 17831257 1
Deletion Chr9 18032129 18032135 6
Deletion Chr6 18449099 18449106 7
Deletion Chr12 19157628 19157634 6
Deletion Chr6 20368001 20412000 43999 4
Deletion Chr12 21037048 21037049 1
Deletion Chr5 21373821 21373823 2
Deletion Chr1 24020097 24020100 3
Deletion Chr4 30337525 30337558 33

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 30505650 30505653 2
Insertion Chr2 24722569 24722572 2
Insertion Chr4 29578710 29578715 4
Insertion Chr4 29976272 29976277 4
Insertion Chr8 7856211 7856214 2
Insertion Chr9 8944349 8944352 2
Insertion Chr11 19496484 19496487 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 3179207 3222684 2
Inversion Chr12 3179210 3222964 OsKitaake12g045700

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 3222964 Chr1 9346887
Translocation Chr12 9233328 Chr2 24672175 OsKitaake02g245400
Translocation Chr12 9233469 Chr2 24672214 OsKitaake02g245400
Translocation Chr12 22639421 Chr5 29329727 OsKitaake12g178100
Translocation Chr12 22649942 Chr5 29329719 OsKitaake12g178300
Translocation Chr11 23062144 Chr1 4030182 OsKitaake01g054400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11853505	G-A	Homo	UTR_5_PRIME
SBS	Chr2	3268005	G-A	Hetero	INTRON
SBS	Chr2	14616599	G-A	Homo	INTERGENIC
SBS	Chr2	15956313	C-T	Homo	INTERGENIC
SBS	Chr2	25850709	G-C	Homo	INTERGENIC
SBS	Chr2	33733728	C-T	Hetero	INTRON
SBS	Chr3	6765955	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g096000
SBS	Chr3	14301478	A-T	Hetero	INTERGENIC
SBS	Chr3	16149037	T-A	Hetero	INTRON
SBS	Chr3	33592475	G-A	Homo	INTERGENIC
SBS	Chr5	6933605	C-T	Hetero	INTERGENIC
SBS	Chr5	9993825	A-G	Hetero	INTERGENIC
SBS	Chr5	22398378	C-A	Hetero	UTR_5_PRIME
SBS	Chr6	16639254	C-T	Hetero	UTR_3_PRIME
SBS	Chr7	18796	A-T	Hetero	INTERGENIC
SBS	Chr7	5012871	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr7	6392636	C-T	Hetero	INTERGENIC
SBS	Chr7	20420524	C-T	Hetero	INTERGENIC
SBS	Chr7	23420160	T-A	Hetero	INTERGENIC
SBS	Chr8	14062370	G-A	Hetero	INTERGENIC
SBS	Chr8	28802837	G-A	Hetero	INTRON
SBS	Chr9	1214016	C-T	Homo	UTR_5_PRIME
SBS	Chr9	11267658	T-G	Hetero	INTERGENIC
SBS	Chr10	1828189	G-A	Homo	INTRON
SBS	Chr10	1828190	C-T	Homo	INTRON
SBS	Chr10	1828191	C-T	Homo	INTRON
SBS	Chr11	2984179	C-T	Homo	INTERGENIC
SBS	Chr11	17896573	G-A	Hetero	INTERGENIC
SBS	Chr11	20336126	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr11	23128481	A-G	Hetero	INTERGENIC
SBS	Chr11	23690503	G-C	Hetero	INTERGENIC
SBS	Chr12	6145986	G-T	Homo	INTERGENIC
SBS	Chr12	24970754	A-G	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	946080	946082	2
Deletion	Chr4	5817257	5817273	16
Deletion	Chr8	6008689	6008690	1
Deletion	Chr5	6941277	6941279	2
Deletion	Chr5	7473866	7473867	1
Deletion	Chr1	9114981	9114982	1
Deletion	Chr11	9656891	9656896	5
Deletion	Chr8	9704728	9704739	11
Deletion	Chr9	10641457	10641465	8
Deletion	Chr12	10678995	10678998	3
Deletion	Chr5	13606945	13606963	18
Deletion	Chr9	14667577	14667580	3
Deletion	Chr3	15795714	15795734	20
Deletion	Chr5	16272089	16272091	2
Deletion	Chr7	16317798	16317805	7
Deletion	Chr10	16809080	16809081	1
Deletion	Chr7	17096613	17096619	6
Deletion	Chr11	17831256	17831257	1
Deletion	Chr9	18032129	18032135	6
Deletion	Chr6	18449099	18449106	7
Deletion	Chr12	19157628	19157634	6
Deletion	Chr6	20368001	20412000	43999	4
Deletion	Chr12	21037048	21037049	1
Deletion	Chr5	21373821	21373823	2
Deletion	Chr1	24020097	24020100	3
Deletion	Chr4	30337525	30337558	33

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	3179207	3222684	2
Inversion	Chr12	3179210	3222964	OsKitaake12g045700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes