Search Kitaake

Mutant Information

Mutant Name	FN2291 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2291 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5856724 C-T Hetero INTERGENIC
SBS Chr1 13230575 G-A Hetero INTERGENIC
SBS Chr1 39296085 C-T Homo INTRON
SBS Chr1 40048073 A-C Hetero UTR_3_PRIME
SBS Chr2 3658717 A-G Homo INTERGENIC
SBS Chr2 8985312 A-G Hetero INTERGENIC
SBS Chr2 20868396 G-A Hetero INTERGENIC
SBS Chr2 26313368 G-T Hetero UTR_5_PRIME
SBS Chr2 32428744 C-T Hetero INTERGENIC
SBS Chr3 28251 A-G Hetero INTERGENIC
SBS Chr3 497376 C-T Hetero INTERGENIC
SBS Chr3 6301819 A-T Homo INTRON
SBS Chr3 10047635 G-A Hetero INTERGENIC
SBS Chr3 10047636 C-T Hetero INTERGENIC
SBS Chr4 1537135 C-A Hetero INTERGENIC
SBS Chr4 19447057 T-G Hetero INTERGENIC
SBS Chr5 5177757 A-T Hetero INTERGENIC
SBS Chr5 11779250 G-A Hetero INTERGENIC
SBS Chr5 12760758 A-C Hetero INTERGENIC
SBS Chr5 15639536 A-G Hetero INTERGENIC
SBS Chr6 17996655 T-C Hetero INTERGENIC
SBS Chr7 4272457 G-T Hetero INTERGENIC
SBS Chr7 4272458 C-G Hetero INTERGENIC
SBS Chr7 4655961 G-C Hetero INTERGENIC
SBS Chr7 9422275 A-T Hetero INTERGENIC
SBS Chr7 16472012 C-T Hetero INTERGENIC
SBS Chr8 15056735 C-G Homo INTERGENIC
SBS Chr8 15056736 G-T Homo INTERGENIC
SBS Chr8 18615240 C-T Hetero INTERGENIC
SBS Chr8 21719150 A-C Hetero INTRON
SBS Chr8 25202458 A-G Hetero INTRON
SBS Chr8 25575727 T-C Hetero INTRON
SBS Chr9 4351378 T-A Hetero INTERGENIC
SBS Chr11 3135720 C-T Hetero INTRON
SBS Chr12 6210050 G-A Hetero INTERGENIC

Deletions: 26

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 28203 28206 3
Deletion Chr8 513028 513030 2
Deletion Chr2 3700269 3700273 4 OsKitaake02g053500
Deletion Chr10 4788133 4788135 2
Deletion Chr4 7753332 7753341 9
Deletion Chr7 10652810 10652812 2
Deletion Chr3 12149001 12195000 45999 4
Deletion Chr5 13318626 13318629 3
Deletion Chr12 15067743 15067744 1
Deletion Chr12 16171665 16171673 8
Deletion Chr11 16296950 16296955 5
Deletion Chr7 16578029 16578039 10
Deletion Chr7 16887275 16887276 1
Deletion Chr5 17749001 17808000 58999 5
Deletion Chr2 18938552 18938555 3
Deletion Chr1 19910637 19910646 9
Deletion Chr2 21137969 21137976 7 OsKitaake02g203700
Deletion Chr2 21178009 21178013 4
Deletion Chr8 22114811 22114813 2
Deletion Chr3 24916677 24916679 2
Deletion Chr5 26840837 26840841 4
Deletion Chr1 27835848 27835849 1
Deletion Chr6 28570545 28570548 3
Deletion Chr2 32406891 32406892 1
Deletion Chr2 33289276 33289277 1
Deletion Chr1 42314508 42314509 1 OsKitaake01g466400

Insertions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 21568005 21568008 2
Insertion Chr4 11797656 11797659 2
Insertion Chr5 28610936 28610939 2
Insertion Chr7 3512595 3512599 3
Insertion Chr7 7941821 7941824 2
Insertion Chr10 2852348 2852351 2
Insertion Chr12 8497002 8497004 1
Insertion Chr12 10387922 10387925 2
Insertion Chr4 30603249 30603252 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 19918456 Chr6 1205429 OsKitaake10g149200
Translocation Chr10 19921123 Chr6 1205426

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5856724	C-T	Hetero	INTERGENIC
SBS	Chr1	13230575	G-A	Hetero	INTERGENIC
SBS	Chr1	39296085	C-T	Homo	INTRON
SBS	Chr1	40048073	A-C	Hetero	UTR_3_PRIME
SBS	Chr2	3658717	A-G	Homo	INTERGENIC
SBS	Chr2	8985312	A-G	Hetero	INTERGENIC
SBS	Chr2	20868396	G-A	Hetero	INTERGENIC
SBS	Chr2	26313368	G-T	Hetero	UTR_5_PRIME
SBS	Chr2	32428744	C-T	Hetero	INTERGENIC
SBS	Chr3	28251	A-G	Hetero	INTERGENIC
SBS	Chr3	497376	C-T	Hetero	INTERGENIC
SBS	Chr3	6301819	A-T	Homo	INTRON
SBS	Chr3	10047635	G-A	Hetero	INTERGENIC
SBS	Chr3	10047636	C-T	Hetero	INTERGENIC
SBS	Chr4	1537135	C-A	Hetero	INTERGENIC
SBS	Chr4	19447057	T-G	Hetero	INTERGENIC
SBS	Chr5	5177757	A-T	Hetero	INTERGENIC
SBS	Chr5	11779250	G-A	Hetero	INTERGENIC
SBS	Chr5	12760758	A-C	Hetero	INTERGENIC
SBS	Chr5	15639536	A-G	Hetero	INTERGENIC
SBS	Chr6	17996655	T-C	Hetero	INTERGENIC
SBS	Chr7	4272457	G-T	Hetero	INTERGENIC
SBS	Chr7	4272458	C-G	Hetero	INTERGENIC
SBS	Chr7	4655961	G-C	Hetero	INTERGENIC
SBS	Chr7	9422275	A-T	Hetero	INTERGENIC
SBS	Chr7	16472012	C-T	Hetero	INTERGENIC
SBS	Chr8	15056735	C-G	Homo	INTERGENIC
SBS	Chr8	15056736	G-T	Homo	INTERGENIC
SBS	Chr8	18615240	C-T	Hetero	INTERGENIC
SBS	Chr8	21719150	A-C	Hetero	INTRON
SBS	Chr8	25202458	A-G	Hetero	INTRON
SBS	Chr8	25575727	T-C	Hetero	INTRON
SBS	Chr9	4351378	T-A	Hetero	INTERGENIC
SBS	Chr11	3135720	C-T	Hetero	INTRON
SBS	Chr12	6210050	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	28203	28206	3
Deletion	Chr8	513028	513030	2
Deletion	Chr2	3700269	3700273	4	OsKitaake02g053500
Deletion	Chr10	4788133	4788135	2
Deletion	Chr4	7753332	7753341	9
Deletion	Chr7	10652810	10652812	2
Deletion	Chr3	12149001	12195000	45999	4
Deletion	Chr5	13318626	13318629	3
Deletion	Chr12	15067743	15067744	1
Deletion	Chr12	16171665	16171673	8
Deletion	Chr11	16296950	16296955	5
Deletion	Chr7	16578029	16578039	10
Deletion	Chr7	16887275	16887276	1
Deletion	Chr5	17749001	17808000	58999	5
Deletion	Chr2	18938552	18938555	3
Deletion	Chr1	19910637	19910646	9
Deletion	Chr2	21137969	21137976	7	OsKitaake02g203700
Deletion	Chr2	21178009	21178013	4
Deletion	Chr8	22114811	22114813	2
Deletion	Chr3	24916677	24916679	2
Deletion	Chr5	26840837	26840841	4
Deletion	Chr1	27835848	27835849	1
Deletion	Chr6	28570545	28570548	3
Deletion	Chr2	32406891	32406892	1
Deletion	Chr2	33289276	33289277	1
Deletion	Chr1	42314508	42314509	1	OsKitaake01g466400

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	19918456	Chr6	1205429	OsKitaake10g149200
Translocation	Chr10	19921123	Chr6	1205426

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes