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Mutant Information

Mutant Name	FN2292 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2292 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5922397 G-A Hetero INTERGENIC
SBS Chr1 6190724 C-T Hetero INTERGENIC
SBS Chr1 22519303 C-T Hetero UTR_3_PRIME
SBS Chr1 26955143 T-G Homo INTRON
SBS Chr1 27294154 G-C Hetero INTRON
SBS Chr2 18130649 C-T Hetero INTERGENIC
SBS Chr2 23383270 C-T Hetero SYNONYMOUS_CODING
SBS Chr2 33337883 G-A Hetero INTERGENIC
SBS Chr3 8430252 G-C Homo INTERGENIC
SBS Chr3 18348772 C-T Hetero INTERGENIC
SBS Chr3 20319483 C-T Hetero INTERGENIC
SBS Chr3 26583605 C-A Homo INTERGENIC
SBS Chr3 30936068 C-T Homo INTERGENIC
SBS Chr3 32089983 C-A Homo UTR_3_PRIME
SBS Chr4 4410427 G-A Hetero INTERGENIC
SBS Chr4 6371883 A-G Hetero INTRON
SBS Chr5 19953618 C-T Hetero INTERGENIC
SBS Chr6 3791817 G-A Hetero INTERGENIC
SBS Chr6 5485728 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g073300
SBS Chr6 10767977 C-T Hetero INTERGENIC
SBS Chr6 15553084 C-G Hetero INTERGENIC
SBS Chr6 15781649 A-T Hetero INTERGENIC
SBS Chr6 17461826 C-T Hetero INTERGENIC
SBS Chr6 18070034 G-A Hetero INTERGENIC
SBS Chr7 870855 C-T Hetero INTRON
SBS Chr8 1564497 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake08g019500
SBS Chr8 29017759 C-A Hetero INTRON
SBS Chr9 12177035 C-T Hetero INTERGENIC
SBS Chr10 1305065 T-A Hetero INTERGENIC
SBS Chr10 1918287 C-T Homo INTERGENIC
SBS Chr10 23536805 T-G Hetero INTERGENIC
SBS Chr11 5898683 A-T Hetero INTERGENIC
SBS Chr11 22710213 G-T Hetero INTRON
SBS Chr12 1420411 C-T Homo INTERGENIC
SBS Chr12 11261811 C-T Hetero INTERGENIC
SBS Chr12 16457382 T-C Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 467318 467322 4
Deletion Chr7 7274365 7274371 6
Deletion Chr9 8716462 8716467 5
Deletion Chr6 15781635 15781636 1
Deletion Chr2 20495020 20495025 5
Deletion Chr9 21660812 21660818 6
Deletion Chr3 29503001 29527000 23999 2
Deletion Chr1 29571501 29571502 1
Deletion Chr2 35310032 35310038 6
Deletion Chr1 39960314 39960315 1

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 3593856 3593859 2
Insertion Chr3 3013941 3013944 2
Insertion Chr3 9650240 9650243 2
Insertion Chr6 16138059 16138062 2
Insertion Chr7 704969 704972 2
Insertion Chr7 4078438 4078442 3
Insertion Chr7 23426614 23426617 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 381205 870023 2
Inversion Chr3 381243 870028 2

Translocations: 9

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 5577410 Chr3 30350766 OsKitaake05g059700
Translocation Chr5 5584715 Chr3 30350778
Translocation Chr9 12104493 Chr8 13276020
Translocation Chr9 12112587 Chr8 13246153 OsKitaake09g078300
Translocation Chr11 16827459 Chr5 5584726 OsKitaake11g132500
Translocation Chr9 17347844 Chr3 29499897
Translocation Chr9 17347852 Chr3 29513120
Translocation Chr5 28246265 Chr3 24136265 OsKitaake05g262200
Translocation Chr5 28246683 Chr3 24136259 OsKitaake05g262200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5922397	G-A	Hetero	INTERGENIC
SBS	Chr1	6190724	C-T	Hetero	INTERGENIC
SBS	Chr1	22519303	C-T	Hetero	UTR_3_PRIME
SBS	Chr1	26955143	T-G	Homo	INTRON
SBS	Chr1	27294154	G-C	Hetero	INTRON
SBS	Chr2	18130649	C-T	Hetero	INTERGENIC
SBS	Chr2	23383270	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	33337883	G-A	Hetero	INTERGENIC
SBS	Chr3	8430252	G-C	Homo	INTERGENIC
SBS	Chr3	18348772	C-T	Hetero	INTERGENIC
SBS	Chr3	20319483	C-T	Hetero	INTERGENIC
SBS	Chr3	26583605	C-A	Homo	INTERGENIC
SBS	Chr3	30936068	C-T	Homo	INTERGENIC
SBS	Chr3	32089983	C-A	Homo	UTR_3_PRIME
SBS	Chr4	4410427	G-A	Hetero	INTERGENIC
SBS	Chr4	6371883	A-G	Hetero	INTRON
SBS	Chr5	19953618	C-T	Hetero	INTERGENIC
SBS	Chr6	3791817	G-A	Hetero	INTERGENIC
SBS	Chr6	5485728	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g073300
SBS	Chr6	10767977	C-T	Hetero	INTERGENIC
SBS	Chr6	15553084	C-G	Hetero	INTERGENIC
SBS	Chr6	15781649	A-T	Hetero	INTERGENIC
SBS	Chr6	17461826	C-T	Hetero	INTERGENIC
SBS	Chr6	18070034	G-A	Hetero	INTERGENIC
SBS	Chr7	870855	C-T	Hetero	INTRON
SBS	Chr8	1564497	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g019500
SBS	Chr8	29017759	C-A	Hetero	INTRON
SBS	Chr9	12177035	C-T	Hetero	INTERGENIC
SBS	Chr10	1305065	T-A	Hetero	INTERGENIC
SBS	Chr10	1918287	C-T	Homo	INTERGENIC
SBS	Chr10	23536805	T-G	Hetero	INTERGENIC
SBS	Chr11	5898683	A-T	Hetero	INTERGENIC
SBS	Chr11	22710213	G-T	Hetero	INTRON
SBS	Chr12	1420411	C-T	Homo	INTERGENIC
SBS	Chr12	11261811	C-T	Hetero	INTERGENIC
SBS	Chr12	16457382	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	467318	467322	4
Deletion	Chr7	7274365	7274371	6
Deletion	Chr9	8716462	8716467	5
Deletion	Chr6	15781635	15781636	1
Deletion	Chr2	20495020	20495025	5
Deletion	Chr9	21660812	21660818	6
Deletion	Chr3	29503001	29527000	23999	2
Deletion	Chr1	29571501	29571502	1
Deletion	Chr2	35310032	35310038	6
Deletion	Chr1	39960314	39960315	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	381205	870023	2
Inversion	Chr3	381243	870028	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes