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Mutant Information

Mutant Name	FN2293 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2293 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2228345 C-T Hetero INTERGENIC
SBS Chr1 12909323 C-T Hetero SPLICE_SITE_DONOR OsKitaake01g154100
SBS Chr1 18638664 G-C Hetero INTERGENIC
SBS Chr1 33347549 G-A Hetero INTERGENIC
SBS Chr1 33719199 A-C Hetero INTERGENIC
SBS Chr1 41313408 G-A Homo INTERGENIC
SBS Chr2 20285182 A-G Hetero INTERGENIC
SBS Chr3 1714715 C-T Hetero INTERGENIC
SBS Chr3 7907442 G-A Hetero INTERGENIC
SBS Chr3 7907443 C-A Hetero INTERGENIC
SBS Chr3 12483082 G-A Hetero INTERGENIC
SBS Chr3 19261030 G-A Hetero INTERGENIC
SBS Chr3 19261033 C-A Hetero INTERGENIC
SBS Chr3 19303522 C-A Hetero INTERGENIC
SBS Chr3 32776992 T-G Homo INTRON
SBS Chr4 3095705 C-T Hetero INTERGENIC
SBS Chr4 8194850 G-A Homo INTERGENIC
SBS Chr4 22965133 T-G Hetero INTERGENIC
SBS Chr4 31497786 G-A Homo UTR_3_PRIME
SBS Chr4 33519452 C-G Homo SYNONYMOUS_CODING
SBS Chr5 5577997 G-A Hetero INTRON
SBS Chr6 4606602 A-C Hetero INTERGENIC
SBS Chr6 9315441 G-A Hetero INTERGENIC
SBS Chr6 11685949 C-T Hetero INTERGENIC
SBS Chr7 4503315 C-T Hetero INTERGENIC
SBS Chr7 14309581 A-G Homo INTERGENIC
SBS Chr7 21948602 G-T Hetero INTERGENIC
SBS Chr8 5290908 A-G Hetero INTERGENIC
SBS Chr8 10266873 C-T Hetero INTERGENIC
SBS Chr8 24033876 G-A Hetero INTERGENIC
SBS Chr8 24187413 G-C Homo INTERGENIC
SBS Chr11 12857605 G-A Homo INTERGENIC
SBS Chr11 15741127 G-A Homo INTERGENIC
SBS Chr12 19802297 T-G Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 7146389 7146390 1
Deletion Chr2 7480803 7480805 2
Deletion Chr7 10744116 10744126 10
Deletion Chr2 13963658 13963660 2
Deletion Chr9 22410879 22410881 2
Deletion Chr8 24916889 24916890 1
Deletion Chr3 29519722 29519726 4
Deletion Chr1 37741734 37741739 5
Deletion Chr1 38966744 38966747 3

Insertions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 24526318 24526320 1
Insertion Chr4 2090917 2090920 2
Insertion Chr4 8340087 8340090 2
Insertion Chr4 13419912 13419916 3
Insertion Chr4 30727466 30727469 2
Insertion Chr8 5723903 5723906 2
Insertion Chr8 11867572 11867575 2
Insertion Chr11 21478854 21478856 1
Insertion Chr7 11991294 11991296 1
Insertion Chr12 22079611 22079613 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 6291187 7052852
Inversion Chr4 6521613 7052862
Inversion Chr4 21847623 22183086
Inversion Chr4 21847635 22183101

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 20421525 Chr3 12595418 OsKitaake10g156200
Translocation Chr10 20421526 Chr3 12595657 OsKitaake10g156200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2228345	C-T	Hetero	INTERGENIC
SBS	Chr1	12909323	C-T	Hetero	SPLICE_SITE_DONOR	OsKitaake01g154100
SBS	Chr1	18638664	G-C	Hetero	INTERGENIC
SBS	Chr1	33347549	G-A	Hetero	INTERGENIC
SBS	Chr1	33719199	A-C	Hetero	INTERGENIC
SBS	Chr1	41313408	G-A	Homo	INTERGENIC
SBS	Chr2	20285182	A-G	Hetero	INTERGENIC
SBS	Chr3	1714715	C-T	Hetero	INTERGENIC
SBS	Chr3	7907442	G-A	Hetero	INTERGENIC
SBS	Chr3	7907443	C-A	Hetero	INTERGENIC
SBS	Chr3	12483082	G-A	Hetero	INTERGENIC
SBS	Chr3	19261030	G-A	Hetero	INTERGENIC
SBS	Chr3	19261033	C-A	Hetero	INTERGENIC
SBS	Chr3	19303522	C-A	Hetero	INTERGENIC
SBS	Chr3	32776992	T-G	Homo	INTRON
SBS	Chr4	3095705	C-T	Hetero	INTERGENIC
SBS	Chr4	8194850	G-A	Homo	INTERGENIC
SBS	Chr4	22965133	T-G	Hetero	INTERGENIC
SBS	Chr4	31497786	G-A	Homo	UTR_3_PRIME
SBS	Chr4	33519452	C-G	Homo	SYNONYMOUS_CODING
SBS	Chr5	5577997	G-A	Hetero	INTRON
SBS	Chr6	4606602	A-C	Hetero	INTERGENIC
SBS	Chr6	9315441	G-A	Hetero	INTERGENIC
SBS	Chr6	11685949	C-T	Hetero	INTERGENIC
SBS	Chr7	4503315	C-T	Hetero	INTERGENIC
SBS	Chr7	14309581	A-G	Homo	INTERGENIC
SBS	Chr7	21948602	G-T	Hetero	INTERGENIC
SBS	Chr8	5290908	A-G	Hetero	INTERGENIC
SBS	Chr8	10266873	C-T	Hetero	INTERGENIC
SBS	Chr8	24033876	G-A	Hetero	INTERGENIC
SBS	Chr8	24187413	G-C	Homo	INTERGENIC
SBS	Chr11	12857605	G-A	Homo	INTERGENIC
SBS	Chr11	15741127	G-A	Homo	INTERGENIC
SBS	Chr12	19802297	T-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	7146389	7146390	1
Deletion	Chr2	7480803	7480805	2
Deletion	Chr7	10744116	10744126	10
Deletion	Chr2	13963658	13963660	2
Deletion	Chr9	22410879	22410881	2
Deletion	Chr8	24916889	24916890	1
Deletion	Chr3	29519722	29519726	4
Deletion	Chr1	37741734	37741739	5
Deletion	Chr1	38966744	38966747	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	6291187	7052852
Inversion	Chr4	6521613	7052862
Inversion	Chr4	21847623	22183086
Inversion	Chr4	21847635	22183101

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes