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Mutant Information

Mutant Name	FN2295 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2295 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 59

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2336850 G-A Hetero INTERGENIC
SBS Chr1 5179530 T-C Hetero INTERGENIC
SBS Chr1 5846585 T-G Hetero INTERGENIC
SBS Chr1 18529027 G-A Hetero INTRON
SBS Chr1 18529028 T-A Hetero INTRON
SBS Chr1 25257710 A-T Hetero INTERGENIC
SBS Chr2 4121230 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g058200
SBS Chr2 4778742 C-T Hetero INTERGENIC
SBS Chr2 15887457 C-T Hetero INTERGENIC
SBS Chr2 27774071 G-A Hetero INTERGENIC
SBS Chr3 153762 C-T Hetero UTR_3_PRIME
SBS Chr3 23112276 T-A Hetero INTERGENIC
SBS Chr3 23112277 T-A Hetero INTERGENIC
SBS Chr3 24089728 C-T Hetero INTERGENIC
SBS Chr3 26796592 C-A Hetero INTERGENIC
SBS Chr3 33652427 C-T Hetero SYNONYMOUS_CODING
SBS Chr4 2319010 A-G Hetero INTERGENIC
SBS Chr4 4547476 C-G Hetero INTERGENIC
SBS Chr4 9796785 C-T Hetero INTERGENIC
SBS Chr4 11964574 G-A Hetero INTERGENIC
SBS Chr4 12096402 T-A Hetero INTRON
SBS Chr4 21906550 T-A Homo INTERGENIC
SBS Chr5 8778528 G-C Homo INTERGENIC
SBS Chr5 11352416 A-G Hetero INTERGENIC
SBS Chr5 18155555 T-C Hetero INTRON
SBS Chr5 19385666 C-T Hetero SYNONYMOUS_CODING
SBS Chr5 23767979 A-G Hetero INTERGENIC
SBS Chr6 7104700 A-G Hetero INTERGENIC
SBS Chr6 12973019 C-T Homo INTERGENIC
SBS Chr6 23768260 C-T Hetero INTERGENIC
SBS Chr6 24891185 G-A Hetero INTRON
SBS Chr7 3712754 C-T Hetero SYNONYMOUS_CODING
SBS Chr7 7740803 G-A Homo INTRON
SBS Chr7 12424287 T-C Homo INTERGENIC
SBS Chr7 12424288 C-G Homo INTERGENIC
SBS Chr7 13813457 C-T Homo INTERGENIC
SBS Chr7 25242807 C-G Hetero INTERGENIC
SBS Chr8 10942632 C-T Hetero INTERGENIC
SBS Chr8 13995283 G-A Hetero INTERGENIC
SBS Chr8 22418395 A-T Hetero INTERGENIC
SBS Chr8 22418396 G-T Hetero INTERGENIC
SBS Chr8 23803352 C-A Hetero INTERGENIC
SBS Chr9 591713 T-C Hetero INTERGENIC
SBS Chr9 2279880 A-T Homo UTR_3_PRIME
SBS Chr9 16984006 G-A Hetero INTERGENIC
SBS Chr10 11911780 G-T Hetero INTERGENIC
SBS Chr10 12883316 C-T Hetero INTERGENIC
SBS Chr10 13125724 C-T Hetero INTERGENIC
SBS Chr10 18021495 A-T Hetero INTERGENIC
SBS Chr10 18646284 G-A Hetero INTERGENIC
SBS Chr11 12228371 T-G Hetero INTERGENIC
SBS Chr11 15406630 G-A Hetero INTERGENIC
SBS Chr11 18272767 G-A Homo INTERGENIC
SBS Chr11 21758820 G-A Hetero INTERGENIC
SBS Chr12 1127598 T-C Hetero INTERGENIC
SBS Chr12 6926387 C-A Hetero INTERGENIC
SBS Chr12 24496186 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g197600
SBS Chr12 24496187 T-A Hetero SYNONYMOUS_CODING
SBS Chr12 25863745 A-G Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 1032577 1032581 4 OsKitaake03g015700
Deletion Chr4 2053931 2053932 1
Deletion Chr6 2607257 2607264 7
Deletion Chr3 3881633 3881640 7
Deletion Chr5 3885404 3885412 8
Deletion Chr9 4199968 4199975 7
Deletion Chr1 6581833 6581840 7
Deletion Chr11 8020800 8020802 2
Deletion Chr2 10316783 10316793 10
Deletion Chr5 14404455 14404471 16
Deletion Chr8 16528049 16528056 7
Deletion Chr8 19679775 19679783 8
Deletion Chr5 19920006 19920008 2
Deletion Chr2 21480477 21480483 6 OsKitaake02g207500
Deletion Chr6 22273340 22273347 7
Deletion Chr3 23090928 23090930 2
Deletion Chr5 28091647 28091648 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 16618185 16618188 2
Insertion Chr3 23574014 23574017 2
Insertion Chr5 4275033 4275035 1
Insertion Chr5 8617708 8617711 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 18916017 18939046

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2336850	G-A	Hetero	INTERGENIC
SBS	Chr1	5179530	T-C	Hetero	INTERGENIC
SBS	Chr1	5846585	T-G	Hetero	INTERGENIC
SBS	Chr1	18529027	G-A	Hetero	INTRON
SBS	Chr1	18529028	T-A	Hetero	INTRON
SBS	Chr1	25257710	A-T	Hetero	INTERGENIC
SBS	Chr2	4121230	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g058200
SBS	Chr2	4778742	C-T	Hetero	INTERGENIC
SBS	Chr2	15887457	C-T	Hetero	INTERGENIC
SBS	Chr2	27774071	G-A	Hetero	INTERGENIC
SBS	Chr3	153762	C-T	Hetero	UTR_3_PRIME
SBS	Chr3	23112276	T-A	Hetero	INTERGENIC
SBS	Chr3	23112277	T-A	Hetero	INTERGENIC
SBS	Chr3	24089728	C-T	Hetero	INTERGENIC
SBS	Chr3	26796592	C-A	Hetero	INTERGENIC
SBS	Chr3	33652427	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	2319010	A-G	Hetero	INTERGENIC
SBS	Chr4	4547476	C-G	Hetero	INTERGENIC
SBS	Chr4	9796785	C-T	Hetero	INTERGENIC
SBS	Chr4	11964574	G-A	Hetero	INTERGENIC
SBS	Chr4	12096402	T-A	Hetero	INTRON
SBS	Chr4	21906550	T-A	Homo	INTERGENIC
SBS	Chr5	8778528	G-C	Homo	INTERGENIC
SBS	Chr5	11352416	A-G	Hetero	INTERGENIC
SBS	Chr5	18155555	T-C	Hetero	INTRON
SBS	Chr5	19385666	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr5	23767979	A-G	Hetero	INTERGENIC
SBS	Chr6	7104700	A-G	Hetero	INTERGENIC
SBS	Chr6	12973019	C-T	Homo	INTERGENIC
SBS	Chr6	23768260	C-T	Hetero	INTERGENIC
SBS	Chr6	24891185	G-A	Hetero	INTRON
SBS	Chr7	3712754	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr7	7740803	G-A	Homo	INTRON
SBS	Chr7	12424287	T-C	Homo	INTERGENIC
SBS	Chr7	12424288	C-G	Homo	INTERGENIC
SBS	Chr7	13813457	C-T	Homo	INTERGENIC
SBS	Chr7	25242807	C-G	Hetero	INTERGENIC
SBS	Chr8	10942632	C-T	Hetero	INTERGENIC
SBS	Chr8	13995283	G-A	Hetero	INTERGENIC
SBS	Chr8	22418395	A-T	Hetero	INTERGENIC
SBS	Chr8	22418396	G-T	Hetero	INTERGENIC
SBS	Chr8	23803352	C-A	Hetero	INTERGENIC
SBS	Chr9	591713	T-C	Hetero	INTERGENIC
SBS	Chr9	2279880	A-T	Homo	UTR_3_PRIME
SBS	Chr9	16984006	G-A	Hetero	INTERGENIC
SBS	Chr10	11911780	G-T	Hetero	INTERGENIC
SBS	Chr10	12883316	C-T	Hetero	INTERGENIC
SBS	Chr10	13125724	C-T	Hetero	INTERGENIC
SBS	Chr10	18021495	A-T	Hetero	INTERGENIC
SBS	Chr10	18646284	G-A	Hetero	INTERGENIC
SBS	Chr11	12228371	T-G	Hetero	INTERGENIC
SBS	Chr11	15406630	G-A	Hetero	INTERGENIC
SBS	Chr11	18272767	G-A	Homo	INTERGENIC
SBS	Chr11	21758820	G-A	Hetero	INTERGENIC
SBS	Chr12	1127598	T-C	Hetero	INTERGENIC
SBS	Chr12	6926387	C-A	Hetero	INTERGENIC
SBS	Chr12	24496186	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g197600
SBS	Chr12	24496187	T-A	Hetero	SYNONYMOUS_CODING
SBS	Chr12	25863745	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	1032577	1032581	4	OsKitaake03g015700
Deletion	Chr4	2053931	2053932	1
Deletion	Chr6	2607257	2607264	7
Deletion	Chr3	3881633	3881640	7
Deletion	Chr5	3885404	3885412	8
Deletion	Chr9	4199968	4199975	7
Deletion	Chr1	6581833	6581840	7
Deletion	Chr11	8020800	8020802	2
Deletion	Chr2	10316783	10316793	10
Deletion	Chr5	14404455	14404471	16
Deletion	Chr8	16528049	16528056	7
Deletion	Chr8	19679775	19679783	8
Deletion	Chr5	19920006	19920008	2
Deletion	Chr2	21480477	21480483	6	OsKitaake02g207500
Deletion	Chr6	22273340	22273347	7
Deletion	Chr3	23090928	23090930	2
Deletion	Chr5	28091647	28091648	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	18916017	18939046

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes