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Mutant Information

Mutant Name	FN2296 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2296 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8515815 C-T Homo INTERGENIC
SBS Chr1 40248145 G-A Hetero INTERGENIC
SBS Chr1 40802355 G-A Homo INTERGENIC
SBS Chr2 3310558 A-G Hetero INTERGENIC
SBS Chr2 7624769 G-T Hetero INTERGENIC
SBS Chr2 7624771 T-A Hetero INTERGENIC
SBS Chr2 11416718 G-C Hetero INTERGENIC
SBS Chr2 34262793 T-A Hetero INTRON
SBS Chr3 13659546 C-T Homo INTERGENIC
SBS Chr3 15311105 A-T Homo INTRON
SBS Chr3 15311106 C-T Homo INTRON
SBS Chr3 15311108 C-A Homo INTRON
SBS Chr3 23074165 G-A Hetero INTERGENIC
SBS Chr3 29764343 G-A Hetero INTERGENIC
SBS Chr3 29764344 A-T Hetero INTERGENIC
SBS Chr4 3391120 G-C Homo INTERGENIC
SBS Chr4 4178511 G-C Hetero INTRON
SBS Chr4 11264777 G-T Homo INTERGENIC
SBS Chr5 9292290 T-A Hetero INTERGENIC
SBS Chr6 345526 G-T Homo INTERGENIC
SBS Chr6 345527 C-T Homo INTERGENIC
SBS Chr6 4256388 G-C Hetero INTERGENIC
SBS Chr6 16405801 C-T Hetero INTERGENIC
SBS Chr7 6224727 G-T Hetero INTERGENIC
SBS Chr7 7469989 G-A Homo INTERGENIC
SBS Chr7 9561563 C-T Homo INTERGENIC
SBS Chr7 11209306 C-T Homo INTERGENIC
SBS Chr7 20827585 C-T Homo INTERGENIC
SBS Chr8 1770949 G-T Homo INTERGENIC
SBS Chr8 10900882 G-T Hetero INTERGENIC
SBS Chr8 24044456 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g185600
SBS Chr8 24182854 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g186700
SBS Chr9 6463257 G-T Hetero INTERGENIC
SBS Chr9 12269864 C-A Hetero INTERGENIC
SBS Chr10 20874542 A-T Homo INTERGENIC
SBS Chr10 22593939 C-T Hetero INTERGENIC
SBS Chr11 16160764 C-A Homo INTERGENIC
SBS Chr11 19402365 G-T Hetero INTERGENIC
SBS Chr11 23647197 G-C Hetero INTERGENIC
SBS Chr11 24602313 C-T Homo INTERGENIC
SBS Chr11 25823024 C-T Hetero INTERGENIC
SBS Chr12 7379407 C-T Hetero INTERGENIC
SBS Chr12 10249481 C-A Hetero INTERGENIC
SBS Chr12 15301034 C-T Hetero INTERGENIC
SBS Chr12 19282654 T-A Homo INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 711939 711941 2
Deletion Chr8 2617449 2617473 24
Deletion Chr7 4614945 4614948 3
Deletion Chr1 11618710 11618716 6
Deletion Chr9 14589373 14589377 4
Deletion Chr3 14985643 14985652 9
Deletion Chr11 18826710 18826714 4
Deletion Chr4 19501141 19501143 2
Deletion Chr3 19560497 19560499 2
Deletion Chr8 19996058 19996060 2
Deletion Chr12 23051064 23051072 8
Deletion Chr5 24594331 24594336 5 OsKitaake05g200000
Deletion Chr11 27646865 27646877 12

Insertions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 25535087 25535090 2
Insertion Chr1 44159912 44159919 6 OsKitaake01g493050
Insertion Chr2 18722210 18722214 3
Insertion Chr2 19159032 19159036 3
Insertion Chr6 20622542 20622547 4
Insertion Chr11 18807537 18807541 3
Insertion Chr11 21666249 21666252 2
Insertion Chr6 1373469 1373476 6
Insertion Chr8 13485807 13485809 1

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 33588158 Chr1 29652672 2
Translocation Chr4 33588163 Chr1 29650568 OsKitaake04g277900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8515815	C-T	Homo	INTERGENIC
SBS	Chr1	40248145	G-A	Hetero	INTERGENIC
SBS	Chr1	40802355	G-A	Homo	INTERGENIC
SBS	Chr2	3310558	A-G	Hetero	INTERGENIC
SBS	Chr2	7624769	G-T	Hetero	INTERGENIC
SBS	Chr2	7624771	T-A	Hetero	INTERGENIC
SBS	Chr2	11416718	G-C	Hetero	INTERGENIC
SBS	Chr2	34262793	T-A	Hetero	INTRON
SBS	Chr3	13659546	C-T	Homo	INTERGENIC
SBS	Chr3	15311105	A-T	Homo	INTRON
SBS	Chr3	15311106	C-T	Homo	INTRON
SBS	Chr3	15311108	C-A	Homo	INTRON
SBS	Chr3	23074165	G-A	Hetero	INTERGENIC
SBS	Chr3	29764343	G-A	Hetero	INTERGENIC
SBS	Chr3	29764344	A-T	Hetero	INTERGENIC
SBS	Chr4	3391120	G-C	Homo	INTERGENIC
SBS	Chr4	4178511	G-C	Hetero	INTRON
SBS	Chr4	11264777	G-T	Homo	INTERGENIC
SBS	Chr5	9292290	T-A	Hetero	INTERGENIC
SBS	Chr6	345526	G-T	Homo	INTERGENIC
SBS	Chr6	345527	C-T	Homo	INTERGENIC
SBS	Chr6	4256388	G-C	Hetero	INTERGENIC
SBS	Chr6	16405801	C-T	Hetero	INTERGENIC
SBS	Chr7	6224727	G-T	Hetero	INTERGENIC
SBS	Chr7	7469989	G-A	Homo	INTERGENIC
SBS	Chr7	9561563	C-T	Homo	INTERGENIC
SBS	Chr7	11209306	C-T	Homo	INTERGENIC
SBS	Chr7	20827585	C-T	Homo	INTERGENIC
SBS	Chr8	1770949	G-T	Homo	INTERGENIC
SBS	Chr8	10900882	G-T	Hetero	INTERGENIC
SBS	Chr8	24044456	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g185600
SBS	Chr8	24182854	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g186700
SBS	Chr9	6463257	G-T	Hetero	INTERGENIC
SBS	Chr9	12269864	C-A	Hetero	INTERGENIC
SBS	Chr10	20874542	A-T	Homo	INTERGENIC
SBS	Chr10	22593939	C-T	Hetero	INTERGENIC
SBS	Chr11	16160764	C-A	Homo	INTERGENIC
SBS	Chr11	19402365	G-T	Hetero	INTERGENIC
SBS	Chr11	23647197	G-C	Hetero	INTERGENIC
SBS	Chr11	24602313	C-T	Homo	INTERGENIC
SBS	Chr11	25823024	C-T	Hetero	INTERGENIC
SBS	Chr12	7379407	C-T	Hetero	INTERGENIC
SBS	Chr12	10249481	C-A	Hetero	INTERGENIC
SBS	Chr12	15301034	C-T	Hetero	INTERGENIC
SBS	Chr12	19282654	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	711939	711941	2
Deletion	Chr8	2617449	2617473	24
Deletion	Chr7	4614945	4614948	3
Deletion	Chr1	11618710	11618716	6
Deletion	Chr9	14589373	14589377	4
Deletion	Chr3	14985643	14985652	9
Deletion	Chr11	18826710	18826714	4
Deletion	Chr4	19501141	19501143	2
Deletion	Chr3	19560497	19560499	2
Deletion	Chr8	19996058	19996060	2
Deletion	Chr12	23051064	23051072	8
Deletion	Chr5	24594331	24594336	5	OsKitaake05g200000
Deletion	Chr11	27646865	27646877	12

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	33588158	Chr1	29652672	2
Translocation	Chr4	33588163	Chr1	29650568	OsKitaake04g277900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes