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Mutant Information

Mutant Name	FN2297 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2297 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16193659 G-A Homo INTERGENIC
SBS Chr1 17647099 G-T Homo INTERGENIC
SBS Chr1 20843781 T-C Homo INTERGENIC
SBS Chr1 24456115 C-T Hetero INTERGENIC
SBS Chr1 27748179 T-A Hetero INTRON
SBS Chr1 27804527 A-G Hetero INTERGENIC
SBS Chr2 3366531 T-C Hetero INTRON
SBS Chr2 25051186 C-T Hetero INTERGENIC
SBS Chr3 32959964 C-T Hetero INTRON
SBS Chr4 12182419 A-G Hetero INTERGENIC
SBS Chr4 24894747 T-A Hetero INTERGENIC
SBS Chr5 12736619 C-T Homo INTERGENIC
SBS Chr6 8787438 A-G Hetero INTERGENIC
SBS Chr6 29460604 G-A Homo INTERGENIC
SBS Chr7 6667286 A-G Hetero INTERGENIC
SBS Chr7 9678876 C-T Hetero INTERGENIC
SBS Chr8 8174256 T-C Hetero INTRON
SBS Chr8 10572626 G-A Hetero INTERGENIC
SBS Chr8 11776307 A-T Hetero INTERGENIC
SBS Chr8 15238935 C-A Hetero INTERGENIC
SBS Chr8 20094287 T-G Hetero INTERGENIC
SBS Chr8 25020273 C-T Homo INTERGENIC
SBS Chr9 13518379 G-T Hetero INTERGENIC
SBS Chr10 1257285 C-A Hetero INTERGENIC
SBS Chr10 12383222 T-G Hetero INTERGENIC
SBS Chr10 13961971 A-G Hetero INTERGENIC
SBS Chr10 19828965 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g147800
SBS Chr11 11999659 G-C Homo INTERGENIC
SBS Chr11 15680837 A-G Hetero INTERGENIC
SBS Chr11 16257271 C-T Homo INTERGENIC
SBS Chr11 19552850 G-A Hetero INTERGENIC
SBS Chr12 3830061 T-A Hetero INTERGENIC
SBS Chr12 3830063 C-T Hetero INTERGENIC
SBS Chr12 8656492 C-G Hetero INTERGENIC
SBS Chr12 11476589 G-A Hetero INTERGENIC
SBS Chr12 14225369 C-T Hetero INTERGENIC
SBS Chr12 20318492 A-G Hetero UTR_3_PRIME

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 1112001 1137000 24999 3
Deletion Chr4 1250001 1264000 13999 OsKitaake04g009700
Deletion Chr12 9120657 9120659 2
Deletion Chr1 19249500 19249506 6
Deletion Chr9 20680219 20680221 2
Deletion Chr3 21633708 21633714 6
Deletion Chr7 29311338 29311345 7
Deletion Chr2 33875906 33875907 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 34723831 34723834 2
Insertion Chr12 809135 809138 2
Insertion Chr12 10016519 10016522 2

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 2431215 2866319
Inversion Chr11 10705557 11024468
Inversion Chr11 11061822 11236863 2
Inversion Chr11 15340763 15575713
Inversion Chr11 15340778 15575724
Inversion Chr2 22603572 22788331 OsKitaake02g219500
Inversion Chr2 22603592 22788351 OsKitaake02g219500

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 7499146 Chr2 21664295 OsKitaake02g209700
Translocation Chr12 7500780 Chr2 2859359 OsKitaake02g041000
Translocation Chr10 10526542 Chr3 7176222
Translocation Chr12 13223506 Chr10 18196673 OsKitaake10g128600
Translocation Chr12 13223518 Chr10 18194230 OsKitaake10g128600
Translocation Chr10 18193487 Chr3 7176224 OsKitaake10g128600
Translocation Chr12 26065110 Chr8 1137465 OsKitaake12g215700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16193659	G-A	Homo	INTERGENIC
SBS	Chr1	17647099	G-T	Homo	INTERGENIC
SBS	Chr1	20843781	T-C	Homo	INTERGENIC
SBS	Chr1	24456115	C-T	Hetero	INTERGENIC
SBS	Chr1	27748179	T-A	Hetero	INTRON
SBS	Chr1	27804527	A-G	Hetero	INTERGENIC
SBS	Chr2	3366531	T-C	Hetero	INTRON
SBS	Chr2	25051186	C-T	Hetero	INTERGENIC
SBS	Chr3	32959964	C-T	Hetero	INTRON
SBS	Chr4	12182419	A-G	Hetero	INTERGENIC
SBS	Chr4	24894747	T-A	Hetero	INTERGENIC
SBS	Chr5	12736619	C-T	Homo	INTERGENIC
SBS	Chr6	8787438	A-G	Hetero	INTERGENIC
SBS	Chr6	29460604	G-A	Homo	INTERGENIC
SBS	Chr7	6667286	A-G	Hetero	INTERGENIC
SBS	Chr7	9678876	C-T	Hetero	INTERGENIC
SBS	Chr8	8174256	T-C	Hetero	INTRON
SBS	Chr8	10572626	G-A	Hetero	INTERGENIC
SBS	Chr8	11776307	A-T	Hetero	INTERGENIC
SBS	Chr8	15238935	C-A	Hetero	INTERGENIC
SBS	Chr8	20094287	T-G	Hetero	INTERGENIC
SBS	Chr8	25020273	C-T	Homo	INTERGENIC
SBS	Chr9	13518379	G-T	Hetero	INTERGENIC
SBS	Chr10	1257285	C-A	Hetero	INTERGENIC
SBS	Chr10	12383222	T-G	Hetero	INTERGENIC
SBS	Chr10	13961971	A-G	Hetero	INTERGENIC
SBS	Chr10	19828965	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g147800
SBS	Chr11	11999659	G-C	Homo	INTERGENIC
SBS	Chr11	15680837	A-G	Hetero	INTERGENIC
SBS	Chr11	16257271	C-T	Homo	INTERGENIC
SBS	Chr11	19552850	G-A	Hetero	INTERGENIC
SBS	Chr12	3830061	T-A	Hetero	INTERGENIC
SBS	Chr12	3830063	C-T	Hetero	INTERGENIC
SBS	Chr12	8656492	C-G	Hetero	INTERGENIC
SBS	Chr12	11476589	G-A	Hetero	INTERGENIC
SBS	Chr12	14225369	C-T	Hetero	INTERGENIC
SBS	Chr12	20318492	A-G	Hetero	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	1112001	1137000	24999	3
Deletion	Chr4	1250001	1264000	13999	OsKitaake04g009700
Deletion	Chr12	9120657	9120659	2
Deletion	Chr1	19249500	19249506	6
Deletion	Chr9	20680219	20680221	2
Deletion	Chr3	21633708	21633714	6
Deletion	Chr7	29311338	29311345	7
Deletion	Chr2	33875906	33875907	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	2431215	2866319
Inversion	Chr11	10705557	11024468
Inversion	Chr11	11061822	11236863	2
Inversion	Chr11	15340763	15575713
Inversion	Chr11	15340778	15575724
Inversion	Chr2	22603572	22788331	OsKitaake02g219500
Inversion	Chr2	22603592	22788351	OsKitaake02g219500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes