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Mutant Information

Mutant Name	FN2298 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2298 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2426371 C-T Hetero INTRON
SBS Chr1 9099098 C-T Hetero INTERGENIC
SBS Chr1 20557775 C-T Hetero INTERGENIC
SBS Chr1 33103877 C-T Hetero INTERGENIC
SBS Chr2 4144601 G-A Homo INTERGENIC
SBS Chr2 4212197 G-A Homo INTRON
SBS Chr2 11215591 C-T Hetero INTERGENIC
SBS Chr2 11476635 C-T Hetero INTERGENIC
SBS Chr2 16329158 G-A Hetero INTERGENIC
SBS Chr2 21367244 C-T Hetero INTERGENIC
SBS Chr2 24119936 C-T Homo INTERGENIC
SBS Chr3 5669387 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g080500
SBS Chr3 31516574 A-G Hetero INTERGENIC
SBS Chr4 1463879 T-C Hetero INTERGENIC
SBS Chr4 7522013 G-A Hetero INTERGENIC
SBS Chr4 20607188 A-G Hetero INTERGENIC
SBS Chr4 26340792 T-A Hetero INTERGENIC
SBS Chr4 34736164 G-T Hetero INTERGENIC
SBS Chr5 11941955 C-T Homo INTERGENIC
SBS Chr5 24492374 T-C Homo INTRON
SBS Chr6 4782927 T-A Hetero UTR_3_PRIME
SBS Chr7 14493046 G-A Hetero INTERGENIC
SBS Chr8 7593979 T-A Hetero INTERGENIC
SBS Chr8 23709245 G-C Hetero INTERGENIC
SBS Chr9 39964 C-T Homo INTERGENIC
SBS Chr9 18099386 G-A Hetero UTR_3_PRIME
SBS Chr11 9371906 C-T Homo INTRON
SBS Chr11 18499527 G-A Hetero INTERGENIC
SBS Chr11 28693161 C-T Hetero INTERGENIC
SBS Chr12 19259584 G-A Hetero SYNONYMOUS_CODING

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 2725979 2725982 3
Deletion Chr2 4146267 4146274 7
Deletion Chr4 4167001 4201000 33999 4
Deletion Chr1 8144904 8144910 6
Deletion Chr5 13007330 13007331 1
Deletion Chr3 13819086 13819087 1
Deletion Chr12 13978001 14026000 47999
Deletion Chr10 17406017 17406019 2
Deletion Chr5 20374740 20374742 2
Deletion Chr4 20758052 20758064 12
Deletion Chr2 23506875 23506882 7
Deletion Chr8 24757330 24757331 1
Deletion Chr2 26934462 26934472 10

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 7356859 7356864 4
Insertion Chr3 11619249 11619257 7
Insertion Chr4 24216930 24216933 2
Insertion Chr7 11890398 11890403 4
Insertion Chr11 6911789 6911794 4
Insertion Chr11 16736356 16736361 4

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 18482282 19345364 OsKitaake01g193300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2426371	C-T	Hetero	INTRON
SBS	Chr1	9099098	C-T	Hetero	INTERGENIC
SBS	Chr1	20557775	C-T	Hetero	INTERGENIC
SBS	Chr1	33103877	C-T	Hetero	INTERGENIC
SBS	Chr2	4144601	G-A	Homo	INTERGENIC
SBS	Chr2	4212197	G-A	Homo	INTRON
SBS	Chr2	11215591	C-T	Hetero	INTERGENIC
SBS	Chr2	11476635	C-T	Hetero	INTERGENIC
SBS	Chr2	16329158	G-A	Hetero	INTERGENIC
SBS	Chr2	21367244	C-T	Hetero	INTERGENIC
SBS	Chr2	24119936	C-T	Homo	INTERGENIC
SBS	Chr3	5669387	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g080500
SBS	Chr3	31516574	A-G	Hetero	INTERGENIC
SBS	Chr4	1463879	T-C	Hetero	INTERGENIC
SBS	Chr4	7522013	G-A	Hetero	INTERGENIC
SBS	Chr4	20607188	A-G	Hetero	INTERGENIC
SBS	Chr4	26340792	T-A	Hetero	INTERGENIC
SBS	Chr4	34736164	G-T	Hetero	INTERGENIC
SBS	Chr5	11941955	C-T	Homo	INTERGENIC
SBS	Chr5	24492374	T-C	Homo	INTRON
SBS	Chr6	4782927	T-A	Hetero	UTR_3_PRIME
SBS	Chr7	14493046	G-A	Hetero	INTERGENIC
SBS	Chr8	7593979	T-A	Hetero	INTERGENIC
SBS	Chr8	23709245	G-C	Hetero	INTERGENIC
SBS	Chr9	39964	C-T	Homo	INTERGENIC
SBS	Chr9	18099386	G-A	Hetero	UTR_3_PRIME
SBS	Chr11	9371906	C-T	Homo	INTRON
SBS	Chr11	18499527	G-A	Hetero	INTERGENIC
SBS	Chr11	28693161	C-T	Hetero	INTERGENIC
SBS	Chr12	19259584	G-A	Hetero	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	2725979	2725982	3
Deletion	Chr2	4146267	4146274	7
Deletion	Chr4	4167001	4201000	33999	4
Deletion	Chr1	8144904	8144910	6
Deletion	Chr5	13007330	13007331	1
Deletion	Chr3	13819086	13819087	1
Deletion	Chr12	13978001	14026000	47999
Deletion	Chr10	17406017	17406019	2
Deletion	Chr5	20374740	20374742	2
Deletion	Chr4	20758052	20758064	12
Deletion	Chr2	23506875	23506882	7
Deletion	Chr8	24757330	24757331	1
Deletion	Chr2	26934462	26934472	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	18482282	19345364	OsKitaake01g193300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes