Search Kitaake

Mutant Information

Mutant Name	FN2299 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2299 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16776981 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g178000
SBS Chr1 16776982 C-T Hetero SYNONYMOUS_CODING
SBS Chr1 21616904 C-A Hetero INTERGENIC
SBS Chr1 27150621 G-A Homo INTERGENIC
SBS Chr1 37784477 G-A Hetero INTERGENIC
SBS Chr2 6387388 T-A Hetero INTERGENIC
SBS Chr2 19250380 T-C Hetero INTERGENIC
SBS Chr2 27199995 C-T Hetero INTERGENIC
SBS Chr2 28470317 C-T Hetero UTR_3_PRIME
SBS Chr2 30732036 G-A Hetero INTERGENIC
SBS Chr3 9197596 A-T Hetero INTRON
SBS Chr3 11610157 T-A Hetero INTERGENIC
SBS Chr3 16541624 C-A Hetero INTERGENIC
SBS Chr3 19330403 C-A Hetero INTERGENIC
SBS Chr3 23301940 A-T Hetero INTRON
SBS Chr4 6812046 C-A Hetero INTERGENIC
SBS Chr4 11964735 G-C Hetero INTERGENIC
SBS Chr4 26323307 T-A Hetero INTRON
SBS Chr4 32436228 G-A Homo INTERGENIC
SBS Chr5 1724594 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g020000
SBS Chr5 6712277 G-A Hetero START_GAINED
SBS Chr5 14402716 G-A Hetero INTERGENIC
SBS Chr7 16900135 G-A Homo INTERGENIC
SBS Chr7 17312205 C-T Homo INTERGENIC
SBS Chr7 22662350 C-T Homo INTERGENIC
SBS Chr8 25607041 T-A Homo INTERGENIC
SBS Chr9 5481856 T-C Hetero INTERGENIC
SBS Chr9 21216430 G-A Hetero INTERGENIC
SBS Chr10 3428881 C-A Hetero INTERGENIC
SBS Chr10 16263426 C-A Hetero INTERGENIC
SBS Chr11 11638974 C-A Homo INTERGENIC
SBS Chr11 14937505 G-A Homo INTERGENIC
SBS Chr11 25132615 G-T Hetero INTERGENIC
SBS Chr12 11713539 T-A Hetero INTERGENIC
SBS Chr12 18364383 T-A Hetero INTERGENIC
SBS Chr12 20521468 G-A Hetero INTERGENIC
SBS Chr12 26667362 A-G Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 633941 633953 12
Deletion Chr10 6009422 6009429 7
Deletion Chr6 11836586 11836591 5
Deletion Chr12 12724048 12724049 1
Deletion Chr12 13036942 13036945 3
Deletion Chr4 18816508 18816510 2
Deletion Chr9 22116814 22116819 5
Deletion Chr8 24613909 24613914 5
Deletion Chr11 26196001 26754000 557999 63

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 6779438 6779443 4
Insertion Chr6 24183681 24183685 3
Insertion Chr8 23537187 23537190 2
Insertion Chr11 3212807 3212815 7
Insertion Chr11 17503389 17503393 3 OsKitaake11g137000
Insertion Chr7 11992111 11992113 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 12553424 12708579 OsKitaake03g169400

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 12672686 Chr1 42284334 2
Translocation Chr11 26760841 Chr3 12708576
Translocation Chr12 27146053 Chr3 12553421 OsKitaake03g169400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16776981	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g178000
SBS	Chr1	16776982	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	21616904	C-A	Hetero	INTERGENIC
SBS	Chr1	27150621	G-A	Homo	INTERGENIC
SBS	Chr1	37784477	G-A	Hetero	INTERGENIC
SBS	Chr2	6387388	T-A	Hetero	INTERGENIC
SBS	Chr2	19250380	T-C	Hetero	INTERGENIC
SBS	Chr2	27199995	C-T	Hetero	INTERGENIC
SBS	Chr2	28470317	C-T	Hetero	UTR_3_PRIME
SBS	Chr2	30732036	G-A	Hetero	INTERGENIC
SBS	Chr3	9197596	A-T	Hetero	INTRON
SBS	Chr3	11610157	T-A	Hetero	INTERGENIC
SBS	Chr3	16541624	C-A	Hetero	INTERGENIC
SBS	Chr3	19330403	C-A	Hetero	INTERGENIC
SBS	Chr3	23301940	A-T	Hetero	INTRON
SBS	Chr4	6812046	C-A	Hetero	INTERGENIC
SBS	Chr4	11964735	G-C	Hetero	INTERGENIC
SBS	Chr4	26323307	T-A	Hetero	INTRON
SBS	Chr4	32436228	G-A	Homo	INTERGENIC
SBS	Chr5	1724594	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g020000
SBS	Chr5	6712277	G-A	Hetero	START_GAINED
SBS	Chr5	14402716	G-A	Hetero	INTERGENIC
SBS	Chr7	16900135	G-A	Homo	INTERGENIC
SBS	Chr7	17312205	C-T	Homo	INTERGENIC
SBS	Chr7	22662350	C-T	Homo	INTERGENIC
SBS	Chr8	25607041	T-A	Homo	INTERGENIC
SBS	Chr9	5481856	T-C	Hetero	INTERGENIC
SBS	Chr9	21216430	G-A	Hetero	INTERGENIC
SBS	Chr10	3428881	C-A	Hetero	INTERGENIC
SBS	Chr10	16263426	C-A	Hetero	INTERGENIC
SBS	Chr11	11638974	C-A	Homo	INTERGENIC
SBS	Chr11	14937505	G-A	Homo	INTERGENIC
SBS	Chr11	25132615	G-T	Hetero	INTERGENIC
SBS	Chr12	11713539	T-A	Hetero	INTERGENIC
SBS	Chr12	18364383	T-A	Hetero	INTERGENIC
SBS	Chr12	20521468	G-A	Hetero	INTERGENIC
SBS	Chr12	26667362	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	633941	633953	12
Deletion	Chr10	6009422	6009429	7
Deletion	Chr6	11836586	11836591	5
Deletion	Chr12	12724048	12724049	1
Deletion	Chr12	13036942	13036945	3
Deletion	Chr4	18816508	18816510	2
Deletion	Chr9	22116814	22116819	5
Deletion	Chr8	24613909	24613914	5
Deletion	Chr11	26196001	26754000	557999	63

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	12553424	12708579	OsKitaake03g169400

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes