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Mutant Information

Mutant Name	FN230-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN230-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11520248 G-A Hetero INTRON
SBS Chr1 16484590 A-G Hetero INTERGENIC
SBS Chr1 21043145 T-C Homo INTRON
SBS Chr1 23180079 G-A Homo INTRON
SBS Chr1 29378704 T-C Homo UTR_3_PRIME
SBS Chr2 7330029 C-T Hetero INTERGENIC
SBS Chr2 13054817 C-T Homo INTERGENIC
SBS Chr2 21311185 T-C Homo INTERGENIC
SBS Chr2 32792137 T-A Hetero INTERGENIC
SBS Chr3 1523801 C-T Hetero INTERGENIC
SBS Chr3 2990543 G-A Homo INTERGENIC
SBS Chr3 16349751 G-A Hetero INTERGENIC
SBS Chr3 24739423 A-G Hetero INTERGENIC
SBS Chr4 1395689 G-T Hetero INTERGENIC
SBS Chr4 1395690 A-T Hetero INTERGENIC
SBS Chr4 3030666 A-G Hetero INTERGENIC
SBS Chr4 4934630 C-A Hetero INTERGENIC
SBS Chr4 4934631 A-C Hetero INTERGENIC
SBS Chr4 28337002 T-C Hetero INTERGENIC
SBS Chr5 2258284 C-T Homo INTERGENIC
SBS Chr5 7206437 T-C Hetero INTERGENIC
SBS Chr5 9649315 C-T Hetero INTERGENIC
SBS Chr5 17603188 A-G Hetero INTERGENIC
SBS Chr6 1459215 C-A Hetero INTERGENIC
SBS Chr6 11275103 T-A Hetero INTERGENIC
SBS Chr6 14055502 C-T Hetero INTERGENIC
SBS Chr6 18643440 T-C Hetero INTERGENIC
SBS Chr7 1014574 A-T Homo INTERGENIC
SBS Chr7 16092502 G-A Homo INTERGENIC
SBS Chr7 18396407 G-A Homo INTERGENIC
SBS Chr10 1339395 C-T Hetero INTERGENIC
SBS Chr10 8733531 C-T Hetero INTERGENIC
SBS Chr10 16123240 T-C Hetero INTERGENIC
SBS Chr11 80391 C-G Hetero INTERGENIC
SBS Chr11 8707768 G-A Homo INTERGENIC
SBS Chr11 19616023 G-A Hetero INTERGENIC
SBS Chr12 723685 G-A Hetero UTR_3_PRIME
SBS Chr12 18517881 T-A Homo INTERGENIC
SBS Chr12 18517882 C-A Homo INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 2671368 2671379 11
Deletion Chr12 4613089 4613099 10
Deletion Chr5 8601766 8601767 1
Deletion Chr6 9503453 9503463 10
Deletion Chr2 9538742 9538746 4
Deletion Chr4 9882054 9882055 1
Deletion Chr8 14262506 14262515 9
Deletion Chr7 17628082 17628098 16
Deletion Chr4 21760321 21760323 2
Deletion Chr1 31672424 31672459 35
Deletion Chr1 42329867 42329875 8

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 411665 411668 2
Insertion Chr10 3785395 3785398 2
Insertion Chr6 12258076 12258079 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 25644050 26025300 OsKitaake11g210100
Inversion Chr11 25923152 26026039

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 25644057 Chr3 15903103
Translocation Chr11 25923145 Chr3 15903098

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11520248	G-A	Hetero	INTRON
SBS	Chr1	16484590	A-G	Hetero	INTERGENIC
SBS	Chr1	21043145	T-C	Homo	INTRON
SBS	Chr1	23180079	G-A	Homo	INTRON
SBS	Chr1	29378704	T-C	Homo	UTR_3_PRIME
SBS	Chr2	7330029	C-T	Hetero	INTERGENIC
SBS	Chr2	13054817	C-T	Homo	INTERGENIC
SBS	Chr2	21311185	T-C	Homo	INTERGENIC
SBS	Chr2	32792137	T-A	Hetero	INTERGENIC
SBS	Chr3	1523801	C-T	Hetero	INTERGENIC
SBS	Chr3	2990543	G-A	Homo	INTERGENIC
SBS	Chr3	16349751	G-A	Hetero	INTERGENIC
SBS	Chr3	24739423	A-G	Hetero	INTERGENIC
SBS	Chr4	1395689	G-T	Hetero	INTERGENIC
SBS	Chr4	1395690	A-T	Hetero	INTERGENIC
SBS	Chr4	3030666	A-G	Hetero	INTERGENIC
SBS	Chr4	4934630	C-A	Hetero	INTERGENIC
SBS	Chr4	4934631	A-C	Hetero	INTERGENIC
SBS	Chr4	28337002	T-C	Hetero	INTERGENIC
SBS	Chr5	2258284	C-T	Homo	INTERGENIC
SBS	Chr5	7206437	T-C	Hetero	INTERGENIC
SBS	Chr5	9649315	C-T	Hetero	INTERGENIC
SBS	Chr5	17603188	A-G	Hetero	INTERGENIC
SBS	Chr6	1459215	C-A	Hetero	INTERGENIC
SBS	Chr6	11275103	T-A	Hetero	INTERGENIC
SBS	Chr6	14055502	C-T	Hetero	INTERGENIC
SBS	Chr6	18643440	T-C	Hetero	INTERGENIC
SBS	Chr7	1014574	A-T	Homo	INTERGENIC
SBS	Chr7	16092502	G-A	Homo	INTERGENIC
SBS	Chr7	18396407	G-A	Homo	INTERGENIC
SBS	Chr10	1339395	C-T	Hetero	INTERGENIC
SBS	Chr10	8733531	C-T	Hetero	INTERGENIC
SBS	Chr10	16123240	T-C	Hetero	INTERGENIC
SBS	Chr11	80391	C-G	Hetero	INTERGENIC
SBS	Chr11	8707768	G-A	Homo	INTERGENIC
SBS	Chr11	19616023	G-A	Hetero	INTERGENIC
SBS	Chr12	723685	G-A	Hetero	UTR_3_PRIME
SBS	Chr12	18517881	T-A	Homo	INTERGENIC
SBS	Chr12	18517882	C-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	2671368	2671379	11
Deletion	Chr12	4613089	4613099	10
Deletion	Chr5	8601766	8601767	1
Deletion	Chr6	9503453	9503463	10
Deletion	Chr2	9538742	9538746	4
Deletion	Chr4	9882054	9882055	1
Deletion	Chr8	14262506	14262515	9
Deletion	Chr7	17628082	17628098	16
Deletion	Chr4	21760321	21760323	2
Deletion	Chr1	31672424	31672459	35
Deletion	Chr1	42329867	42329875	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	25644050	26025300	OsKitaake11g210100
Inversion	Chr11	25923152	26026039

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes