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Mutant Information

Mutant Name	FN2300 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2300 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1748085 A-T Hetero INTERGENIC
SBS Chr2 5806113 C-G Hetero INTRON
SBS Chr2 6770822 G-C Hetero INTERGENIC
SBS Chr2 28252728 C-A Hetero INTERGENIC
SBS Chr3 16401456 C-T Homo INTERGENIC
SBS Chr3 22576850 C-A Hetero INTERGENIC
SBS Chr3 26639785 A-T Hetero INTERGENIC
SBS Chr4 1719723 T-C Hetero INTRON
SBS Chr4 17635849 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g088200
SBS Chr4 21189897 A-G Hetero UTR_3_PRIME
SBS Chr4 26143598 T-G Hetero INTERGENIC
SBS Chr4 27047580 G-A Hetero INTERGENIC
SBS Chr5 25706990 A-T Hetero INTERGENIC
SBS Chr6 11993154 T-C Homo INTERGENIC
SBS Chr6 14321077 G-A Homo INTERGENIC
SBS Chr6 24869737 A-C Hetero UTR_5_PRIME
SBS Chr6 27520334 C-T Hetero INTERGENIC
SBS Chr7 8012942 G-A Hetero INTERGENIC
SBS Chr7 10345062 G-A Hetero INTERGENIC
SBS Chr7 10550491 G-A Hetero INTERGENIC
SBS Chr7 15734193 G-A Hetero SYNONYMOUS_CODING
SBS Chr8 10361464 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g093200
SBS Chr8 11216347 C-G Hetero INTERGENIC
SBS Chr8 14719575 G-A Hetero INTERGENIC
SBS Chr8 19378707 G-A Hetero INTERGENIC
SBS Chr8 19378709 C-T Hetero INTERGENIC
SBS Chr8 20509945 C-G Hetero SYNONYMOUS_CODING
SBS Chr9 13477074 C-T Homo INTERGENIC
SBS Chr9 22447024 G-C Hetero INTERGENIC
SBS Chr11 9066705 T-C Hetero INTERGENIC
SBS Chr11 9990728 T-C Hetero INTERGENIC
SBS Chr11 10394600 A-C Hetero INTERGENIC
SBS Chr11 26658317 C-T Hetero INTERGENIC
SBS Chr12 1911334 G-T Hetero INTERGENIC
SBS Chr12 6474505 T-C Hetero INTERGENIC
SBS Chr12 24612666 G-T Homo INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 6365366 6365369 3
Deletion Chr3 12495629 12495635 6
Deletion Chr11 12641742 12641744 2
Deletion Chr2 13945976 13945981 5
Deletion Chr10 15236272 15236273 1
Deletion Chr10 16178796 16178798 2
Deletion Chr3 18844942 18844943 1
Deletion Chr10 21736406 21736407 1
Deletion Chr6 27336620 27336621 1
Deletion Chr4 34702001 34744000 41999 6

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 6932554 6932557 2
Insertion Chr4 3416809 3416812 2
Insertion Chr12 19828647 19828650 2
Insertion Chr11 12480143 12480153 9

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 11273622 11595598 OsKitaake01g140600

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 3014723 Chr4 1712239 OsKitaake08g033600
Translocation Chr8 3014764 Chr4 1712095 OsKitaake08g033600
Translocation Chr11 8734313 Chr7 15154231 OsKitaake07g126900
Translocation Chr11 8735396 Chr7 15154229 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1748085	A-T	Hetero	INTERGENIC
SBS	Chr2	5806113	C-G	Hetero	INTRON
SBS	Chr2	6770822	G-C	Hetero	INTERGENIC
SBS	Chr2	28252728	C-A	Hetero	INTERGENIC
SBS	Chr3	16401456	C-T	Homo	INTERGENIC
SBS	Chr3	22576850	C-A	Hetero	INTERGENIC
SBS	Chr3	26639785	A-T	Hetero	INTERGENIC
SBS	Chr4	1719723	T-C	Hetero	INTRON
SBS	Chr4	17635849	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g088200
SBS	Chr4	21189897	A-G	Hetero	UTR_3_PRIME
SBS	Chr4	26143598	T-G	Hetero	INTERGENIC
SBS	Chr4	27047580	G-A	Hetero	INTERGENIC
SBS	Chr5	25706990	A-T	Hetero	INTERGENIC
SBS	Chr6	11993154	T-C	Homo	INTERGENIC
SBS	Chr6	14321077	G-A	Homo	INTERGENIC
SBS	Chr6	24869737	A-C	Hetero	UTR_5_PRIME
SBS	Chr6	27520334	C-T	Hetero	INTERGENIC
SBS	Chr7	8012942	G-A	Hetero	INTERGENIC
SBS	Chr7	10345062	G-A	Hetero	INTERGENIC
SBS	Chr7	10550491	G-A	Hetero	INTERGENIC
SBS	Chr7	15734193	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr8	10361464	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g093200
SBS	Chr8	11216347	C-G	Hetero	INTERGENIC
SBS	Chr8	14719575	G-A	Hetero	INTERGENIC
SBS	Chr8	19378707	G-A	Hetero	INTERGENIC
SBS	Chr8	19378709	C-T	Hetero	INTERGENIC
SBS	Chr8	20509945	C-G	Hetero	SYNONYMOUS_CODING
SBS	Chr9	13477074	C-T	Homo	INTERGENIC
SBS	Chr9	22447024	G-C	Hetero	INTERGENIC
SBS	Chr11	9066705	T-C	Hetero	INTERGENIC
SBS	Chr11	9990728	T-C	Hetero	INTERGENIC
SBS	Chr11	10394600	A-C	Hetero	INTERGENIC
SBS	Chr11	26658317	C-T	Hetero	INTERGENIC
SBS	Chr12	1911334	G-T	Hetero	INTERGENIC
SBS	Chr12	6474505	T-C	Hetero	INTERGENIC
SBS	Chr12	24612666	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	6365366	6365369	3
Deletion	Chr3	12495629	12495635	6
Deletion	Chr11	12641742	12641744	2
Deletion	Chr2	13945976	13945981	5
Deletion	Chr10	15236272	15236273	1
Deletion	Chr10	16178796	16178798	2
Deletion	Chr3	18844942	18844943	1
Deletion	Chr10	21736406	21736407	1
Deletion	Chr6	27336620	27336621	1
Deletion	Chr4	34702001	34744000	41999	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	11273622	11595598	OsKitaake01g140600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes