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Mutant Information

Mutant Name	FN2301 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2301 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1397186 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g016900
SBS Chr1 3465792 C-A Hetero STOP_GAINED OsKitaake01g045800
SBS Chr1 7274879 C-A Hetero INTERGENIC
SBS Chr1 9790042 A-G Hetero UTR_3_PRIME
SBS Chr1 13398213 G-A Hetero INTERGENIC
SBS Chr1 37056595 A-G Homo INTRON
SBS Chr3 357940 T-A Hetero INTERGENIC
SBS Chr3 3531459 G-A Hetero INTERGENIC
SBS Chr3 18358102 G-T Homo INTERGENIC
SBS Chr3 27387605 G-C Homo INTERGENIC
SBS Chr3 32109626 A-G Hetero INTRON
SBS Chr3 35352956 G-A Hetero INTERGENIC
SBS Chr3 35426682 G-A Hetero INTERGENIC
SBS Chr4 9389968 G-C Homo INTERGENIC
SBS Chr4 11967327 C-G Hetero INTERGENIC
SBS Chr4 13641159 C-T Homo INTERGENIC
SBS Chr4 16471006 C-T Hetero INTERGENIC
SBS Chr4 21789508 C-T Hetero INTERGENIC
SBS Chr4 21789509 G-C Hetero INTERGENIC
SBS Chr4 21789510 C-T Hetero INTERGENIC
SBS Chr4 22088078 T-A Hetero INTERGENIC
SBS Chr4 23078803 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake04g140400
SBS Chr5 8294255 T-A Hetero INTERGENIC
SBS Chr5 21834336 T-A Hetero INTERGENIC
SBS Chr6 2383160 A-G Hetero INTERGENIC
SBS Chr6 5577325 T-A Hetero INTERGENIC
SBS Chr6 16380277 T-C Hetero INTRON
SBS Chr6 18673062 G-T Hetero INTERGENIC
SBS Chr7 11312203 C-T Hetero INTRON
SBS Chr7 14432634 C-A Hetero INTERGENIC
SBS Chr7 15284301 T-A Hetero INTERGENIC
SBS Chr7 15745444 T-C Hetero INTRON
SBS Chr7 17224856 G-C Hetero INTERGENIC
SBS Chr8 17796326 C-G Hetero INTERGENIC
SBS Chr8 29298618 C-T Hetero INTERGENIC
SBS Chr9 3671338 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake09g019300
SBS Chr9 16325145 C-T Hetero START_GAINED
SBS Chr10 6509322 G-A Hetero INTERGENIC
SBS Chr11 1282944 A-T Hetero INTERGENIC
SBS Chr11 3125371 C-G Hetero INTERGENIC
SBS Chr11 9250555 C-T Hetero INTERGENIC
SBS Chr12 15599188 C-T Hetero INTERGENIC
SBS Chr12 17794335 A-C Hetero INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 2450001 2470000 19999 5
Deletion Chr8 6708001 6727000 18999
Deletion Chr4 6795938 6795941 3
Deletion Chr12 11658160 11658314 154
Deletion Chr8 15018001 15044000 25999 OsKitaake08g117500
Deletion Chr12 22741001 22746000 4999 2
Deletion Chr6 30577873 30577874 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 1413243 1413246 2
Insertion Chr9 14269874 14269878 3
Insertion Chr12 19122607 19122610 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 7326229 7358892
Inversion Chr10 7326237 7358911
Inversion Chr6 13192474 13519046
Inversion Chr6 13192569 13519047

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 24924597 Chr3 10399053

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1397186	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g016900
SBS	Chr1	3465792	C-A	Hetero	STOP_GAINED	OsKitaake01g045800
SBS	Chr1	7274879	C-A	Hetero	INTERGENIC
SBS	Chr1	9790042	A-G	Hetero	UTR_3_PRIME
SBS	Chr1	13398213	G-A	Hetero	INTERGENIC
SBS	Chr1	37056595	A-G	Homo	INTRON
SBS	Chr3	357940	T-A	Hetero	INTERGENIC
SBS	Chr3	3531459	G-A	Hetero	INTERGENIC
SBS	Chr3	18358102	G-T	Homo	INTERGENIC
SBS	Chr3	27387605	G-C	Homo	INTERGENIC
SBS	Chr3	32109626	A-G	Hetero	INTRON
SBS	Chr3	35352956	G-A	Hetero	INTERGENIC
SBS	Chr3	35426682	G-A	Hetero	INTERGENIC
SBS	Chr4	9389968	G-C	Homo	INTERGENIC
SBS	Chr4	11967327	C-G	Hetero	INTERGENIC
SBS	Chr4	13641159	C-T	Homo	INTERGENIC
SBS	Chr4	16471006	C-T	Hetero	INTERGENIC
SBS	Chr4	21789508	C-T	Hetero	INTERGENIC
SBS	Chr4	21789509	G-C	Hetero	INTERGENIC
SBS	Chr4	21789510	C-T	Hetero	INTERGENIC
SBS	Chr4	22088078	T-A	Hetero	INTERGENIC
SBS	Chr4	23078803	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g140400
SBS	Chr5	8294255	T-A	Hetero	INTERGENIC
SBS	Chr5	21834336	T-A	Hetero	INTERGENIC
SBS	Chr6	2383160	A-G	Hetero	INTERGENIC
SBS	Chr6	5577325	T-A	Hetero	INTERGENIC
SBS	Chr6	16380277	T-C	Hetero	INTRON
SBS	Chr6	18673062	G-T	Hetero	INTERGENIC
SBS	Chr7	11312203	C-T	Hetero	INTRON
SBS	Chr7	14432634	C-A	Hetero	INTERGENIC
SBS	Chr7	15284301	T-A	Hetero	INTERGENIC
SBS	Chr7	15745444	T-C	Hetero	INTRON
SBS	Chr7	17224856	G-C	Hetero	INTERGENIC
SBS	Chr8	17796326	C-G	Hetero	INTERGENIC
SBS	Chr8	29298618	C-T	Hetero	INTERGENIC
SBS	Chr9	3671338	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g019300
SBS	Chr9	16325145	C-T	Hetero	START_GAINED
SBS	Chr10	6509322	G-A	Hetero	INTERGENIC
SBS	Chr11	1282944	A-T	Hetero	INTERGENIC
SBS	Chr11	3125371	C-G	Hetero	INTERGENIC
SBS	Chr11	9250555	C-T	Hetero	INTERGENIC
SBS	Chr12	15599188	C-T	Hetero	INTERGENIC
SBS	Chr12	17794335	A-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	2450001	2470000	19999	5
Deletion	Chr8	6708001	6727000	18999
Deletion	Chr4	6795938	6795941	3
Deletion	Chr12	11658160	11658314	154
Deletion	Chr8	15018001	15044000	25999	OsKitaake08g117500
Deletion	Chr12	22741001	22746000	4999	2
Deletion	Chr6	30577873	30577874	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	7326229	7358892
Inversion	Chr10	7326237	7358911
Inversion	Chr6	13192474	13519046
Inversion	Chr6	13192569	13519047

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes