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Mutant Information

Mutant Name	FN2302 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2302 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12457487 C-T Hetero INTERGENIC
SBS Chr1 28412867 C-T Hetero INTERGENIC
SBS Chr1 33569009 C-T Homo INTERGENIC
SBS Chr1 42423305 C-A Homo INTERGENIC
SBS Chr1 44056547 A-T Homo INTERGENIC
SBS Chr2 4045625 G-T Homo UTR_5_PRIME
SBS Chr2 26739929 C-T Hetero INTERGENIC
SBS Chr3 19472766 G-A Hetero INTERGENIC
SBS Chr4 6621694 C-T Hetero INTERGENIC
SBS Chr5 25662048 G-C Hetero INTRON
SBS Chr5 30161612 A-T Homo INTERGENIC
SBS Chr6 1755588 A-T Hetero INTERGENIC
SBS Chr6 2349932 G-T Hetero INTERGENIC
SBS Chr6 9034582 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g108700
SBS Chr6 9034583 G-T Hetero SYNONYMOUS_CODING
SBS Chr6 9034584 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g108700
SBS Chr6 9964910 C-T Hetero INTERGENIC
SBS Chr6 11133377 C-G Hetero UTR_3_PRIME
SBS Chr6 16672757 T-C Hetero INTRON
SBS Chr6 23850517 C-A Hetero INTERGENIC
SBS Chr6 25124577 G-A Hetero START_GAINED
SBS Chr7 2237416 G-C Hetero INTERGENIC
SBS Chr7 7598264 G-T Hetero INTERGENIC
SBS Chr7 21049952 G-T Homo UTR_5_PRIME
SBS Chr7 21049953 T-G Homo UTR_5_PRIME
SBS Chr7 22038041 C-T Homo INTRON
SBS Chr9 13827908 T-C Hetero INTERGENIC
SBS Chr9 14674520 A-G Hetero INTERGENIC
SBS Chr10 7780509 C-T Hetero INTERGENIC
SBS Chr11 3081005 G-A Homo INTERGENIC
SBS Chr11 4123427 C-T Homo INTERGENIC
SBS Chr11 25275291 G-T Homo INTERGENIC
SBS Chr12 16369653 G-T Homo INTERGENIC
SBS Chr12 24229526 G-A Hetero INTERGENIC

Deletions: 25

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 774295 774296 1
Deletion Chr10 2636443 2636444 1
Deletion Chr1 2798440 2798452 12 OsKitaake01g035300
Deletion Chr2 2836341 2836355 14
Deletion Chr11 4106415 4106422 7
Deletion Chr2 7459001 7486000 26999
Deletion Chr5 7585309 7585312 3
Deletion Chr3 9273362 9273379 17
Deletion Chr3 10266529 10266531 2
Deletion Chr2 11988124 11988139 15 OsKitaake02g136200
Deletion Chr1 14163583 14163591 8
Deletion Chr3 16917001 16973000 55999 3
Deletion Chr8 18914419 18914429 10
Deletion Chr2 19142321 19142323 2
Deletion Chr5 22317001 22320000 2999
Deletion Chr8 23482579 23482583 4 OsKitaake08g180800
Deletion Chr3 24282542 24282545 3
Deletion Chr11 25324362 25324375 13
Deletion Chr5 25845255 25845257 2
Deletion Chr8 29123423 29123433 10 OsKitaake08g253000
Deletion Chr7 29323654 29323657 3
Deletion Chr5 29561527 29561533 6
Deletion Chr1 31150991 31150992 1 OsKitaake01g311000
Deletion Chr4 31836409 31836411 2
Deletion Chr4 36208882 36208898 16

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 16837110 16837113 2
Insertion Chr6 12338791 12338794 2
Insertion Chr10 2232757 2232760 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 18486262 18576056 OsKitaake05g144300
Inversion Chr5 18486266 18576089 OsKitaake05g144300
Inversion Chr6 23421608 23867830 OsKitaake06g210800
Inversion Chr6 23421628 23867865 OsKitaake06g210800

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 22316410 Chr3 24285157 OsKitaake03g259800
Translocation Chr5 22320056 Chr3 24284089 OsKitaake03g259700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12457487	C-T	Hetero	INTERGENIC
SBS	Chr1	28412867	C-T	Hetero	INTERGENIC
SBS	Chr1	33569009	C-T	Homo	INTERGENIC
SBS	Chr1	42423305	C-A	Homo	INTERGENIC
SBS	Chr1	44056547	A-T	Homo	INTERGENIC
SBS	Chr2	4045625	G-T	Homo	UTR_5_PRIME
SBS	Chr2	26739929	C-T	Hetero	INTERGENIC
SBS	Chr3	19472766	G-A	Hetero	INTERGENIC
SBS	Chr4	6621694	C-T	Hetero	INTERGENIC
SBS	Chr5	25662048	G-C	Hetero	INTRON
SBS	Chr5	30161612	A-T	Homo	INTERGENIC
SBS	Chr6	1755588	A-T	Hetero	INTERGENIC
SBS	Chr6	2349932	G-T	Hetero	INTERGENIC
SBS	Chr6	9034582	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g108700
SBS	Chr6	9034583	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	9034584	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g108700
SBS	Chr6	9964910	C-T	Hetero	INTERGENIC
SBS	Chr6	11133377	C-G	Hetero	UTR_3_PRIME
SBS	Chr6	16672757	T-C	Hetero	INTRON
SBS	Chr6	23850517	C-A	Hetero	INTERGENIC
SBS	Chr6	25124577	G-A	Hetero	START_GAINED
SBS	Chr7	2237416	G-C	Hetero	INTERGENIC
SBS	Chr7	7598264	G-T	Hetero	INTERGENIC
SBS	Chr7	21049952	G-T	Homo	UTR_5_PRIME
SBS	Chr7	21049953	T-G	Homo	UTR_5_PRIME
SBS	Chr7	22038041	C-T	Homo	INTRON
SBS	Chr9	13827908	T-C	Hetero	INTERGENIC
SBS	Chr9	14674520	A-G	Hetero	INTERGENIC
SBS	Chr10	7780509	C-T	Hetero	INTERGENIC
SBS	Chr11	3081005	G-A	Homo	INTERGENIC
SBS	Chr11	4123427	C-T	Homo	INTERGENIC
SBS	Chr11	25275291	G-T	Homo	INTERGENIC
SBS	Chr12	16369653	G-T	Homo	INTERGENIC
SBS	Chr12	24229526	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	774295	774296	1
Deletion	Chr10	2636443	2636444	1
Deletion	Chr1	2798440	2798452	12	OsKitaake01g035300
Deletion	Chr2	2836341	2836355	14
Deletion	Chr11	4106415	4106422	7
Deletion	Chr2	7459001	7486000	26999
Deletion	Chr5	7585309	7585312	3
Deletion	Chr3	9273362	9273379	17
Deletion	Chr3	10266529	10266531	2
Deletion	Chr2	11988124	11988139	15	OsKitaake02g136200
Deletion	Chr1	14163583	14163591	8
Deletion	Chr3	16917001	16973000	55999	3
Deletion	Chr8	18914419	18914429	10
Deletion	Chr2	19142321	19142323	2
Deletion	Chr5	22317001	22320000	2999
Deletion	Chr8	23482579	23482583	4	OsKitaake08g180800
Deletion	Chr3	24282542	24282545	3
Deletion	Chr11	25324362	25324375	13
Deletion	Chr5	25845255	25845257	2
Deletion	Chr8	29123423	29123433	10	OsKitaake08g253000
Deletion	Chr7	29323654	29323657	3
Deletion	Chr5	29561527	29561533	6
Deletion	Chr1	31150991	31150992	1	OsKitaake01g311000
Deletion	Chr4	31836409	31836411	2
Deletion	Chr4	36208882	36208898	16

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	18486262	18576056	OsKitaake05g144300
Inversion	Chr5	18486266	18576089	OsKitaake05g144300
Inversion	Chr6	23421608	23867830	OsKitaake06g210800
Inversion	Chr6	23421628	23867865	OsKitaake06g210800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes