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Mutant Information

Mutant Name	FN2304 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2304 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 50

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4030557 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g054400
SBS Chr1 4030558 A-T Hetero SPLICE_SITE_REGION
SBS Chr1 4053767 A-G Hetero INTERGENIC
SBS Chr1 16021131 C-T Homo INTERGENIC
SBS Chr1 23430784 T-C Homo INTERGENIC
SBS Chr1 27732371 G-A Homo INTERGENIC
SBS Chr1 29765450 C-T Homo INTERGENIC
SBS Chr1 34909284 G-A Hetero INTERGENIC
SBS Chr1 35249162 A-G Homo INTERGENIC
SBS Chr1 38422425 A-G Homo INTRON
SBS Chr1 39991204 G-A Homo NON_SYNONYMOUS_CODING OsKitaake01g433000
SBS Chr2 10952492 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g128200
SBS Chr2 16265165 C-T Hetero INTERGENIC
SBS Chr2 22635920 T-C Hetero INTERGENIC
SBS Chr2 23428729 T-C Hetero INTRON
SBS Chr3 8911360 T-C Hetero INTRON
SBS Chr3 30084677 A-G Homo INTERGENIC
SBS Chr4 3557541 G-A Hetero INTERGENIC
SBS Chr4 12045128 T-A Hetero INTERGENIC
SBS Chr4 14078023 A-G Hetero INTERGENIC
SBS Chr4 16125734 C-T Homo INTERGENIC
SBS Chr4 18679479 A-G Hetero INTERGENIC
SBS Chr4 23657223 C-A Homo INTRON
SBS Chr5 880708 C-T Hetero INTRON
SBS Chr5 9166452 A-C Homo INTERGENIC
SBS Chr5 16709100 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g127900
SBS Chr5 23956930 G-A Hetero INTERGENIC
SBS Chr6 15702254 T-C Hetero INTERGENIC
SBS Chr6 16915258 C-T Hetero INTERGENIC
SBS Chr6 18404746 T-C Hetero INTERGENIC
SBS Chr6 26358528 T-A Homo INTERGENIC
SBS Chr6 26358532 G-A Homo INTERGENIC
SBS Chr7 13330795 C-T Hetero INTERGENIC
SBS Chr8 14683064 C-T Hetero INTERGENIC
SBS Chr8 15320591 G-A Hetero INTERGENIC
SBS Chr9 1693093 C-T Hetero INTERGENIC
SBS Chr9 8957912 T-C Hetero INTERGENIC
SBS Chr10 2123974 C-T Hetero UTR_5_PRIME
SBS Chr10 4902191 C-T Hetero INTERGENIC
SBS Chr10 11970824 A-G Hetero INTERGENIC
SBS Chr10 11970825 G-A Hetero INTERGENIC
SBS Chr10 19909263 T-C Hetero INTERGENIC
SBS Chr11 9094673 C-T Hetero INTERGENIC
SBS Chr11 9904756 C-T Hetero INTERGENIC
SBS Chr11 13961913 T-C Homo INTERGENIC
SBS Chr11 15575365 C-G Hetero INTERGENIC
SBS Chr11 20292011 C-T Homo UTR_3_PRIME
SBS Chr12 8212911 A-G Hetero INTERGENIC
SBS Chr12 8540685 G-A Hetero INTERGENIC
SBS Chr12 15269048 G-A Hetero INTERGENIC

Deletions: 32

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 86784 86796 12
Deletion Chr1 1485876 1485877 1
Deletion Chr3 1587027 1587063 36 OsKitaake03g022300
Deletion Chr5 2556538 2556542 4
Deletion Chr1 3139270 3139272 2 OsKitaake01g041000
Deletion Chr3 3655567 3655579 12
Deletion Chr7 3967650 3967651 1
Deletion Chr5 5399409 5399410 1
Deletion Chr6 5447564 5447570 6
Deletion Chr6 6976001 7022000 45999 2
Deletion Chr3 7098056 7098063 7
Deletion Chr2 10143976 10143978 2
Deletion Chr12 10402031 10402035 4
Deletion Chr7 10875933 10875934 1
Deletion Chr2 12484065 12484071 6
Deletion Chr9 13794537 13794553 16
Deletion Chr5 15505483 15505503 20
Deletion Chr6 15527264 15527268 4
Deletion Chr9 15724629 15724632 3
Deletion Chr12 17401045 17401046 1
Deletion Chr7 19807093 19807098 5
Deletion Chr3 22333062 22333076 14
Deletion Chr2 23873401 23873403 2
Deletion Chr6 26178260 26178268 8
Deletion Chr11 27446729 27446745 16
Deletion Chr3 28053843 28053852 9
Deletion Chr8 28506548 28506550 2
Deletion Chr7 29236001 29261000 24999 4
Deletion Chr7 29386437 29386450 13
Deletion Chr2 34992425 34992430 5
Deletion Chr3 37475323 37475338 15
Deletion Chr1 38498921 38498931 10

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr10 5219507 5219510 2
Insertion Chr12 19828679 19828682 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 27087676 27158759
Inversion Chr4 27087691 27158769

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 1213522 Chr4 32655255
Translocation Chr5 1227055 Chr4 32655269

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4030557	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g054400
SBS	Chr1	4030558	A-T	Hetero	SPLICE_SITE_REGION
SBS	Chr1	4053767	A-G	Hetero	INTERGENIC
SBS	Chr1	16021131	C-T	Homo	INTERGENIC
SBS	Chr1	23430784	T-C	Homo	INTERGENIC
SBS	Chr1	27732371	G-A	Homo	INTERGENIC
SBS	Chr1	29765450	C-T	Homo	INTERGENIC
SBS	Chr1	34909284	G-A	Hetero	INTERGENIC
SBS	Chr1	35249162	A-G	Homo	INTERGENIC
SBS	Chr1	38422425	A-G	Homo	INTRON
SBS	Chr1	39991204	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g433000
SBS	Chr2	10952492	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g128200
SBS	Chr2	16265165	C-T	Hetero	INTERGENIC
SBS	Chr2	22635920	T-C	Hetero	INTERGENIC
SBS	Chr2	23428729	T-C	Hetero	INTRON
SBS	Chr3	8911360	T-C	Hetero	INTRON
SBS	Chr3	30084677	A-G	Homo	INTERGENIC
SBS	Chr4	3557541	G-A	Hetero	INTERGENIC
SBS	Chr4	12045128	T-A	Hetero	INTERGENIC
SBS	Chr4	14078023	A-G	Hetero	INTERGENIC
SBS	Chr4	16125734	C-T	Homo	INTERGENIC
SBS	Chr4	18679479	A-G	Hetero	INTERGENIC
SBS	Chr4	23657223	C-A	Homo	INTRON
SBS	Chr5	880708	C-T	Hetero	INTRON
SBS	Chr5	9166452	A-C	Homo	INTERGENIC
SBS	Chr5	16709100	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g127900
SBS	Chr5	23956930	G-A	Hetero	INTERGENIC
SBS	Chr6	15702254	T-C	Hetero	INTERGENIC
SBS	Chr6	16915258	C-T	Hetero	INTERGENIC
SBS	Chr6	18404746	T-C	Hetero	INTERGENIC
SBS	Chr6	26358528	T-A	Homo	INTERGENIC
SBS	Chr6	26358532	G-A	Homo	INTERGENIC
SBS	Chr7	13330795	C-T	Hetero	INTERGENIC
SBS	Chr8	14683064	C-T	Hetero	INTERGENIC
SBS	Chr8	15320591	G-A	Hetero	INTERGENIC
SBS	Chr9	1693093	C-T	Hetero	INTERGENIC
SBS	Chr9	8957912	T-C	Hetero	INTERGENIC
SBS	Chr10	2123974	C-T	Hetero	UTR_5_PRIME
SBS	Chr10	4902191	C-T	Hetero	INTERGENIC
SBS	Chr10	11970824	A-G	Hetero	INTERGENIC
SBS	Chr10	11970825	G-A	Hetero	INTERGENIC
SBS	Chr10	19909263	T-C	Hetero	INTERGENIC
SBS	Chr11	9094673	C-T	Hetero	INTERGENIC
SBS	Chr11	9904756	C-T	Hetero	INTERGENIC
SBS	Chr11	13961913	T-C	Homo	INTERGENIC
SBS	Chr11	15575365	C-G	Hetero	INTERGENIC
SBS	Chr11	20292011	C-T	Homo	UTR_3_PRIME
SBS	Chr12	8212911	A-G	Hetero	INTERGENIC
SBS	Chr12	8540685	G-A	Hetero	INTERGENIC
SBS	Chr12	15269048	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	86784	86796	12
Deletion	Chr1	1485876	1485877	1
Deletion	Chr3	1587027	1587063	36	OsKitaake03g022300
Deletion	Chr5	2556538	2556542	4
Deletion	Chr1	3139270	3139272	2	OsKitaake01g041000
Deletion	Chr3	3655567	3655579	12
Deletion	Chr7	3967650	3967651	1
Deletion	Chr5	5399409	5399410	1
Deletion	Chr6	5447564	5447570	6
Deletion	Chr6	6976001	7022000	45999	2
Deletion	Chr3	7098056	7098063	7
Deletion	Chr2	10143976	10143978	2
Deletion	Chr12	10402031	10402035	4
Deletion	Chr7	10875933	10875934	1
Deletion	Chr2	12484065	12484071	6
Deletion	Chr9	13794537	13794553	16
Deletion	Chr5	15505483	15505503	20
Deletion	Chr6	15527264	15527268	4
Deletion	Chr9	15724629	15724632	3
Deletion	Chr12	17401045	17401046	1
Deletion	Chr7	19807093	19807098	5
Deletion	Chr3	22333062	22333076	14
Deletion	Chr2	23873401	23873403	2
Deletion	Chr6	26178260	26178268	8
Deletion	Chr11	27446729	27446745	16
Deletion	Chr3	28053843	28053852	9
Deletion	Chr8	28506548	28506550	2
Deletion	Chr7	29236001	29261000	24999	4
Deletion	Chr7	29386437	29386450	13
Deletion	Chr2	34992425	34992430	5
Deletion	Chr3	37475323	37475338	15
Deletion	Chr1	38498921	38498931	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	27087676	27158759
Inversion	Chr4	27087691	27158769

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes