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Mutant Information

Mutant Name	FN2305 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2305 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14283665 A-T Hetero INTERGENIC
SBS Chr1 18117510 A-G Hetero INTERGENIC
SBS Chr1 28854596 T-A Hetero INTERGENIC
SBS Chr1 36710562 C-T Homo UTR_3_PRIME
SBS Chr2 8711336 A-T Hetero INTERGENIC
SBS Chr2 12610114 C-T Hetero INTRON
SBS Chr2 12923992 A-T Hetero INTERGENIC
SBS Chr2 13158852 A-T Hetero INTERGENIC
SBS Chr2 22600050 A-T Homo INTERGENIC
SBS Chr3 28436844 G-A Hetero INTERGENIC
SBS Chr3 31147543 C-T Homo INTERGENIC
SBS Chr4 4358230 G-T Homo INTERGENIC
SBS Chr4 6889468 C-T Homo INTERGENIC
SBS Chr5 4423870 T-C Hetero INTERGENIC
SBS Chr5 9578880 G-A Hetero INTERGENIC
SBS Chr6 177664 C-T Homo INTERGENIC
SBS Chr7 1418284 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g020100
SBS Chr7 6381427 T-C Hetero INTERGENIC
SBS Chr7 6442668 C-T Hetero INTERGENIC
SBS Chr7 11953725 T-A Hetero INTERGENIC
SBS Chr7 24795584 G-A Hetero INTERGENIC
SBS Chr8 693770 T-G Hetero INTRON
SBS Chr8 1191805 C-T Hetero INTERGENIC
SBS Chr8 2194681 G-C Hetero INTERGENIC
SBS Chr8 6409560 A-G Hetero INTERGENIC
SBS Chr8 7347625 C-T Hetero INTERGENIC
SBS Chr8 11415367 G-A Hetero INTERGENIC
SBS Chr8 22770503 C-T Hetero INTERGENIC
SBS Chr8 26237277 T-A Hetero SYNONYMOUS_CODING
SBS Chr8 27918204 A-G Hetero INTERGENIC
SBS Chr9 3820352 C-T Hetero INTERGENIC
SBS Chr9 5369730 C-T Hetero INTERGENIC
SBS Chr10 3544617 A-C Hetero INTERGENIC
SBS Chr10 3544618 G-T Hetero INTERGENIC
SBS Chr10 14115541 C-G Hetero INTERGENIC
SBS Chr10 18929579 G-A Hetero INTERGENIC
SBS Chr10 21490743 G-T Hetero INTERGENIC
SBS Chr10 21490744 A-T Hetero INTERGENIC
SBS Chr11 16884421 G-A Hetero INTERGENIC
SBS Chr11 19357373 G-A Homo INTERGENIC
SBS Chr12 7733463 A-T Homo INTERGENIC
SBS Chr12 8581792 C-A Hetero INTERGENIC
SBS Chr12 14141062 C-A Hetero INTERGENIC
SBS Chr12 14851195 G-T Hetero INTERGENIC
SBS Chr12 15959605 G-T Hetero INTERGENIC
SBS Chr12 24511826 G-A Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 1934032 1934040 8
Deletion Chr7 3177001 3281000 103999 19
Deletion Chr8 5995663 5995666 3
Deletion Chr1 17619001 17646000 26999 3
Deletion Chr1 18278001 18315000 36999 2
Deletion Chr5 18939792 18939793 1
Deletion Chr2 22425001 22518000 92999 16
Deletion Chr1 29366001 29406000 39999 10
Deletion Chr1 37849493 37849495 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 26885873 26885875 1
Insertion Chr6 18300309 18300312 2
Insertion Chr8 11524606 11524609 2

Inversions: 15

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 3174401 3834829 OsKitaake07g039500
Inversion Chr7 3279891 3834831
Inversion Chr7 6047600 6416356
Inversion Chr2 9500308 10103050
Inversion Chr7 13238564 13520021 OsKitaake07g116950
Inversion Chr7 13442840 13516606
Inversion Chr7 13460288 13520015
Inversion Chr7 13460296 13516607
Inversion Chr1 18117854 18131525 OsKitaake01g183100
Inversion Chr1 18131530 18313512 2
Inversion Chr5 19315651 19985971
Inversion Chr2 22429695 22777889 OsKitaake02g217100
Inversion Chr2 22517489 22777900 OsKitaake02g218500
Inversion Chr2 22825554 22993399 2
Inversion Chr2 22825579 22993407 2

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 11594891 Chr1 29363073 OsKitaake01g287100
Translocation Chr11 11595597 Chr1 29405710
Translocation Chr8 14701109 Chr7 13442843
Translocation Chr8 14701345 Chr7 13238523 OsKitaake07g116950
Translocation Chr5 19985972 Chr1 11006857 OsKitaake01g135500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14283665	A-T	Hetero	INTERGENIC
SBS	Chr1	18117510	A-G	Hetero	INTERGENIC
SBS	Chr1	28854596	T-A	Hetero	INTERGENIC
SBS	Chr1	36710562	C-T	Homo	UTR_3_PRIME
SBS	Chr2	8711336	A-T	Hetero	INTERGENIC
SBS	Chr2	12610114	C-T	Hetero	INTRON
SBS	Chr2	12923992	A-T	Hetero	INTERGENIC
SBS	Chr2	13158852	A-T	Hetero	INTERGENIC
SBS	Chr2	22600050	A-T	Homo	INTERGENIC
SBS	Chr3	28436844	G-A	Hetero	INTERGENIC
SBS	Chr3	31147543	C-T	Homo	INTERGENIC
SBS	Chr4	4358230	G-T	Homo	INTERGENIC
SBS	Chr4	6889468	C-T	Homo	INTERGENIC
SBS	Chr5	4423870	T-C	Hetero	INTERGENIC
SBS	Chr5	9578880	G-A	Hetero	INTERGENIC
SBS	Chr6	177664	C-T	Homo	INTERGENIC
SBS	Chr7	1418284	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g020100
SBS	Chr7	6381427	T-C	Hetero	INTERGENIC
SBS	Chr7	6442668	C-T	Hetero	INTERGENIC
SBS	Chr7	11953725	T-A	Hetero	INTERGENIC
SBS	Chr7	24795584	G-A	Hetero	INTERGENIC
SBS	Chr8	693770	T-G	Hetero	INTRON
SBS	Chr8	1191805	C-T	Hetero	INTERGENIC
SBS	Chr8	2194681	G-C	Hetero	INTERGENIC
SBS	Chr8	6409560	A-G	Hetero	INTERGENIC
SBS	Chr8	7347625	C-T	Hetero	INTERGENIC
SBS	Chr8	11415367	G-A	Hetero	INTERGENIC
SBS	Chr8	22770503	C-T	Hetero	INTERGENIC
SBS	Chr8	26237277	T-A	Hetero	SYNONYMOUS_CODING
SBS	Chr8	27918204	A-G	Hetero	INTERGENIC
SBS	Chr9	3820352	C-T	Hetero	INTERGENIC
SBS	Chr9	5369730	C-T	Hetero	INTERGENIC
SBS	Chr10	3544617	A-C	Hetero	INTERGENIC
SBS	Chr10	3544618	G-T	Hetero	INTERGENIC
SBS	Chr10	14115541	C-G	Hetero	INTERGENIC
SBS	Chr10	18929579	G-A	Hetero	INTERGENIC
SBS	Chr10	21490743	G-T	Hetero	INTERGENIC
SBS	Chr10	21490744	A-T	Hetero	INTERGENIC
SBS	Chr11	16884421	G-A	Hetero	INTERGENIC
SBS	Chr11	19357373	G-A	Homo	INTERGENIC
SBS	Chr12	7733463	A-T	Homo	INTERGENIC
SBS	Chr12	8581792	C-A	Hetero	INTERGENIC
SBS	Chr12	14141062	C-A	Hetero	INTERGENIC
SBS	Chr12	14851195	G-T	Hetero	INTERGENIC
SBS	Chr12	15959605	G-T	Hetero	INTERGENIC
SBS	Chr12	24511826	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	1934032	1934040	8
Deletion	Chr7	3177001	3281000	103999	19
Deletion	Chr8	5995663	5995666	3
Deletion	Chr1	17619001	17646000	26999	3
Deletion	Chr1	18278001	18315000	36999	2
Deletion	Chr5	18939792	18939793	1
Deletion	Chr2	22425001	22518000	92999	16
Deletion	Chr1	29366001	29406000	39999	10
Deletion	Chr1	37849493	37849495	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	3174401	3834829	OsKitaake07g039500
Inversion	Chr7	3279891	3834831
Inversion	Chr7	6047600	6416356
Inversion	Chr2	9500308	10103050
Inversion	Chr7	13238564	13520021	OsKitaake07g116950
Inversion	Chr7	13442840	13516606
Inversion	Chr7	13460288	13520015
Inversion	Chr7	13460296	13516607
Inversion	Chr1	18117854	18131525	OsKitaake01g183100
Inversion	Chr1	18131530	18313512	2
Inversion	Chr5	19315651	19985971
Inversion	Chr2	22429695	22777889	OsKitaake02g217100
Inversion	Chr2	22517489	22777900	OsKitaake02g218500
Inversion	Chr2	22825554	22993399	2
Inversion	Chr2	22825579	22993407	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes