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Mutant Information

Mutant Name	FN2306 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2306 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 16

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 18910221 C-T Hetero INTERGENIC
SBS Chr2 36459127 G-T Hetero INTRON
SBS Chr4 7487500 G-A Homo INTERGENIC
SBS Chr4 10432403 A-G Homo INTERGENIC
SBS Chr4 11608966 C-A Hetero INTERGENIC
SBS Chr6 5561821 T-C Hetero INTRON
SBS Chr6 8330650 A-G Hetero INTERGENIC
SBS Chr6 18675738 G-A Homo INTERGENIC
SBS Chr6 26732731 G-A Hetero INTERGENIC
SBS Chr7 12254799 C-T Homo INTERGENIC
SBS Chr7 24784521 T-G Hetero INTERGENIC
SBS Chr8 24336367 C-T Hetero INTERGENIC
SBS Chr9 18241519 T-C Hetero INTERGENIC
SBS Chr10 3211108 C-T Homo INTERGENIC
SBS Chr10 9205437 C-T Hetero INTERGENIC
SBS Chr11 10076733 G-A Hetero INTRON

Deletions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 2835049 2835053 4
Deletion Chr6 9539974 9539975 1
Deletion Chr7 13724001 13730000 5999
Deletion Chr6 15744514 15744515 1
Deletion Chr11 23499864 23499941 77

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 35328984 35328987 2
Insertion Chr3 26310606 26310609 2
Insertion Chr4 2898788 2898791 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 13161440 Chr4 9669415

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18910221	C-T	Hetero	INTERGENIC
SBS	Chr2	36459127	G-T	Hetero	INTRON
SBS	Chr4	7487500	G-A	Homo	INTERGENIC
SBS	Chr4	10432403	A-G	Homo	INTERGENIC
SBS	Chr4	11608966	C-A	Hetero	INTERGENIC
SBS	Chr6	5561821	T-C	Hetero	INTRON
SBS	Chr6	8330650	A-G	Hetero	INTERGENIC
SBS	Chr6	18675738	G-A	Homo	INTERGENIC
SBS	Chr6	26732731	G-A	Hetero	INTERGENIC
SBS	Chr7	12254799	C-T	Homo	INTERGENIC
SBS	Chr7	24784521	T-G	Hetero	INTERGENIC
SBS	Chr8	24336367	C-T	Hetero	INTERGENIC
SBS	Chr9	18241519	T-C	Hetero	INTERGENIC
SBS	Chr10	3211108	C-T	Homo	INTERGENIC
SBS	Chr10	9205437	C-T	Hetero	INTERGENIC
SBS	Chr11	10076733	G-A	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	2835049	2835053	4
Deletion	Chr6	9539974	9539975	1
Deletion	Chr7	13724001	13730000	5999
Deletion	Chr6	15744514	15744515	1
Deletion	Chr11	23499864	23499941	77

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	13161440	Chr4	9669415

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes