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Mutant Information

Mutant Name	FN2307 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2307 Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10351265	C-G	Hetero	INTERGENIC
SBS	Chr1	15588037	G-A	Hetero	INTERGENIC
SBS	Chr1	18854784	G-T	Hetero	INTERGENIC
SBS	Chr1	22876378	A-T	Hetero	INTERGENIC
SBS	Chr2	2532175	G-A	Hetero	INTERGENIC
SBS	Chr2	9737042	A-C	Hetero	INTERGENIC
SBS	Chr2	20945563	C-T	Hetero	INTERGENIC
SBS	Chr2	23906506	G-A	Hetero	INTERGENIC
SBS	Chr3	16752567	C-T	Homo	INTERGENIC
SBS	Chr3	37003615	G-A	Hetero	INTRON
SBS	Chr4	35418999	G-A	Hetero	INTERGENIC
SBS	Chr5	3025771	C-A	Homo	STOP_GAINED	OsKitaake05g035600
SBS	Chr5	23529482	T-A	Homo	INTERGENIC
SBS	Chr5	23529483	T-A	Homo	INTERGENIC
SBS	Chr5	26869499	T-A	Homo	INTERGENIC
SBS	Chr7	1495199	G-A	Hetero	INTERGENIC
SBS	Chr7	3028603	G-A	Hetero	INTERGENIC
SBS	Chr7	4364093	A-T	Hetero	INTERGENIC
SBS	Chr7	4778130	T-C	Homo	INTERGENIC
SBS	Chr8	8270103	A-T	Hetero	INTERGENIC
SBS	Chr8	11155857	C-T	Hetero	INTERGENIC
SBS	Chr8	16646141	C-T	Hetero	INTERGENIC
SBS	Chr9	16791022	G-A	Homo	INTERGENIC
SBS	Chr10	10015264	A-T	Homo	INTERGENIC
SBS	Chr11	15682078	C-T	Hetero	INTERGENIC
SBS	Chr11	20684065	G-A	Homo	INTERGENIC
SBS	Chr11	25592536	C-G	Hetero	INTERGENIC
SBS	Chr12	65698	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g000700

Deletions: 33

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	2772656	2772660	4
Deletion	Chr12	2778021	2778043	22
Deletion	Chr2	3749294	3749295	1
Deletion	Chr1	3909041	3909042	1
Deletion	Chr4	4330968	4330970	2	OsKitaake04g021401
Deletion	Chr12	4859223	4859234	11
Deletion	Chr9	8747290	8747296	6
Deletion	Chr1	8938979	8938981	2
Deletion	Chr11	9128827	9128845	18
Deletion	Chr2	9248315	9248331	16
Deletion	Chr1	9668123	9668132	9
Deletion	Chr1	10392366	10392371	5
Deletion	Chr5	13582001	13614000	31999	3
Deletion	Chr10	15540185	15540187	2
Deletion	Chr3	16488354	16488365	11
Deletion	Chr1	17761499	17761501	2
Deletion	Chr11	18397396	18397397	1	OsKitaake11g142900
Deletion	Chr1	18414195	18414201	6
Deletion	Chr3	19119322	19119333	11
Deletion	Chr8	19795070	19795071	1
Deletion	Chr9	20572470	20572471	1	OsKitaake09g174100
Deletion	Chr7	20843517	20843519	2
Deletion	Chr6	21221479	21221482	3
Deletion	Chr1	21913789	21913795	6
Deletion	Chr5	24089095	24089096	1
Deletion	Chr5	24974476	24974482	6
Deletion	Chr12	25714608	25714622	14
Deletion	Chr5	26166509	26166521	12
Deletion	Chr3	26590140	26590141	1	OsKitaake03g277200
Deletion	Chr2	28098958	28098974	16
Deletion	Chr2	34269001	34439000	169999	21
Deletion	Chr3	37694592	37694594	2
Deletion	Chr1	39769789	39769793	4	OsKitaake01g430000

Insertions: 9

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr1	41606577	41606581	3
Insertion	Chr2	21197580	21197583	2
Insertion	Chr2	36069658	36069661	2
Insertion	Chr3	4460519	4460523	3
Insertion	Chr5	8142866	8142869	2
Insertion	Chr5	29773097	29773100	2
Insertion	Chr6	4515665	4515668	2
Insertion	Chr10	1583685	1583689	3
Insertion	Chr11	9627496	9627499	2

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	4799992	Chr3	36594981
Translocation	Chr8	4800015	Chr3	36535349	OsKitaake03g406100
Translocation	Chr11	16567440	Chr2	21962135	2
Translocation	Chr11	16569983	Chr2	21962199	2
Translocation	Chr2	34371632	Chr1	9263098	2
Translocation	Chr2	34387242	Chr1	9263081	OsKitaake01g119100