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Mutant Information

Mutant Name	FN2308 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2308 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 48

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9579591 T-C Homo INTERGENIC
SBS Chr1 21742615 T-C Hetero INTERGENIC
SBS Chr1 41189309 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g449700
SBS Chr1 41189705 T-A Hetero INTRON
SBS Chr2 343988 G-C Hetero INTRON
SBS Chr2 7206197 G-A Homo INTRON
SBS Chr2 19520489 G-A Hetero INTERGENIC
SBS Chr2 30817958 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g306766
SBS Chr3 1713338 A-T Hetero INTERGENIC
SBS Chr3 6957254 C-A Hetero INTERGENIC
SBS Chr3 9652588 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g131500
SBS Chr3 20189000 T-C Homo INTERGENIC
SBS Chr3 27439437 A-T Homo INTERGENIC
SBS Chr4 2073847 C-G Homo INTERGENIC
SBS Chr4 4369880 G-A Homo INTERGENIC
SBS Chr4 9654277 T-A Homo INTERGENIC
SBS Chr4 24508794 A-T Hetero INTERGENIC
SBS Chr4 34187424 A-C Hetero INTERGENIC
SBS Chr5 4513950 G-A Hetero INTERGENIC
SBS Chr5 7264277 A-T Hetero INTERGENIC
SBS Chr5 8379376 C-T Hetero INTERGENIC
SBS Chr5 14992978 C-T Hetero INTERGENIC
SBS Chr5 19178716 C-T Hetero INTRON
SBS Chr5 29060884 A-G Homo INTRON
SBS Chr5 30263342 A-G Hetero INTERGENIC
SBS Chr6 7771400 T-C Hetero INTERGENIC
SBS Chr6 21260839 A-T Homo INTRON
SBS Chr6 24551751 C-A Hetero INTERGENIC
SBS Chr7 14742683 C-T Hetero INTERGENIC
SBS Chr8 6724306 G-A Hetero INTERGENIC
SBS Chr8 8454940 A-G Hetero INTERGENIC
SBS Chr8 9385664 T-C Hetero INTERGENIC
SBS Chr8 16345410 G-T Hetero INTERGENIC
SBS Chr8 18164649 C-T Hetero INTERGENIC
SBS Chr8 21955940 C-A Hetero INTERGENIC
SBS Chr8 24983551 C-G Hetero INTERGENIC
SBS Chr9 5343789 G-A Hetero INTERGENIC
SBS Chr9 14968431 T-C Hetero INTERGENIC
SBS Chr9 18552155 T-A Hetero INTERGENIC
SBS Chr10 8559762 G-A Hetero INTERGENIC
SBS Chr10 13528174 C-T Hetero INTERGENIC
SBS Chr10 20191445 C-T Hetero INTERGENIC
SBS Chr10 22659695 T-A Hetero INTRON
SBS Chr11 7661361 T-A Homo NON_SYNONYMOUS_CODING OsKitaake11g085800
SBS Chr11 14650891 G-T Hetero INTERGENIC
SBS Chr11 18087831 C-A Hetero INTERGENIC
SBS Chr12 3385528 T-A Hetero UTR_3_PRIME
SBS Chr12 22475194 G-A Hetero INTRON

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1841532 1841536 4
Deletion Chr5 4200551 4200556 5
Deletion Chr10 4599028 4599030 2
Deletion Chr4 7811280 7811295 15 OsKitaake04g039700
Deletion Chr4 8043293 8043295 2 OsKitaake04g042100
Deletion Chr11 13023001 13499000 475999 7
Deletion Chr7 13726001 13730000 3999
Deletion Chr8 15088883 15088889 6
Deletion Chr4 19295931 19295949 18
Deletion Chr8 19769308 19769310 2
Deletion Chr10 20015568 20015581 13
Deletion Chr7 20544980 20544987 7
Deletion Chr5 26475629 26475630 1
Deletion Chr7 27530394 27530396 2
Deletion Chr3 27978884 27978892 8

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 1247873 1247880 6
Insertion Chr3 30881529 30881534 4
Insertion Chr4 1643343 1643346 2
Insertion Chr4 26104339 26104342 2
Insertion Chr8 29242137 29242142 4
Insertion Chr12 24974480 24974483 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 16322672 17228973
Inversion Chr3 16322701 17228997
Inversion Chr1 30513002 30749392 OsKitaake01g304300
Inversion Chr1 30749401 30772397 2

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 7814033 Chr5 27348283 2
Translocation Chr6 7826225 Chr5 27348266 2
Translocation Chr4 18669587 Chr3 14915546 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9579591	T-C	Homo	INTERGENIC
SBS	Chr1	21742615	T-C	Hetero	INTERGENIC
SBS	Chr1	41189309	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g449700
SBS	Chr1	41189705	T-A	Hetero	INTRON
SBS	Chr2	343988	G-C	Hetero	INTRON
SBS	Chr2	7206197	G-A	Homo	INTRON
SBS	Chr2	19520489	G-A	Hetero	INTERGENIC
SBS	Chr2	30817958	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g306766
SBS	Chr3	1713338	A-T	Hetero	INTERGENIC
SBS	Chr3	6957254	C-A	Hetero	INTERGENIC
SBS	Chr3	9652588	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g131500
SBS	Chr3	20189000	T-C	Homo	INTERGENIC
SBS	Chr3	27439437	A-T	Homo	INTERGENIC
SBS	Chr4	2073847	C-G	Homo	INTERGENIC
SBS	Chr4	4369880	G-A	Homo	INTERGENIC
SBS	Chr4	9654277	T-A	Homo	INTERGENIC
SBS	Chr4	24508794	A-T	Hetero	INTERGENIC
SBS	Chr4	34187424	A-C	Hetero	INTERGENIC
SBS	Chr5	4513950	G-A	Hetero	INTERGENIC
SBS	Chr5	7264277	A-T	Hetero	INTERGENIC
SBS	Chr5	8379376	C-T	Hetero	INTERGENIC
SBS	Chr5	14992978	C-T	Hetero	INTERGENIC
SBS	Chr5	19178716	C-T	Hetero	INTRON
SBS	Chr5	29060884	A-G	Homo	INTRON
SBS	Chr5	30263342	A-G	Hetero	INTERGENIC
SBS	Chr6	7771400	T-C	Hetero	INTERGENIC
SBS	Chr6	21260839	A-T	Homo	INTRON
SBS	Chr6	24551751	C-A	Hetero	INTERGENIC
SBS	Chr7	14742683	C-T	Hetero	INTERGENIC
SBS	Chr8	6724306	G-A	Hetero	INTERGENIC
SBS	Chr8	8454940	A-G	Hetero	INTERGENIC
SBS	Chr8	9385664	T-C	Hetero	INTERGENIC
SBS	Chr8	16345410	G-T	Hetero	INTERGENIC
SBS	Chr8	18164649	C-T	Hetero	INTERGENIC
SBS	Chr8	21955940	C-A	Hetero	INTERGENIC
SBS	Chr8	24983551	C-G	Hetero	INTERGENIC
SBS	Chr9	5343789	G-A	Hetero	INTERGENIC
SBS	Chr9	14968431	T-C	Hetero	INTERGENIC
SBS	Chr9	18552155	T-A	Hetero	INTERGENIC
SBS	Chr10	8559762	G-A	Hetero	INTERGENIC
SBS	Chr10	13528174	C-T	Hetero	INTERGENIC
SBS	Chr10	20191445	C-T	Hetero	INTERGENIC
SBS	Chr10	22659695	T-A	Hetero	INTRON
SBS	Chr11	7661361	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g085800
SBS	Chr11	14650891	G-T	Hetero	INTERGENIC
SBS	Chr11	18087831	C-A	Hetero	INTERGENIC
SBS	Chr12	3385528	T-A	Hetero	UTR_3_PRIME
SBS	Chr12	22475194	G-A	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1841532	1841536	4
Deletion	Chr5	4200551	4200556	5
Deletion	Chr10	4599028	4599030	2
Deletion	Chr4	7811280	7811295	15	OsKitaake04g039700
Deletion	Chr4	8043293	8043295	2	OsKitaake04g042100
Deletion	Chr11	13023001	13499000	475999	7
Deletion	Chr7	13726001	13730000	3999
Deletion	Chr8	15088883	15088889	6
Deletion	Chr4	19295931	19295949	18
Deletion	Chr8	19769308	19769310	2
Deletion	Chr10	20015568	20015581	13
Deletion	Chr7	20544980	20544987	7
Deletion	Chr5	26475629	26475630	1
Deletion	Chr7	27530394	27530396	2
Deletion	Chr3	27978884	27978892	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	16322672	17228973
Inversion	Chr3	16322701	17228997
Inversion	Chr1	30513002	30749392	OsKitaake01g304300
Inversion	Chr1	30749401	30772397	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes