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Mutant Information

Mutant Name	FN2309 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2309 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3296655 G-A Homo INTERGENIC
SBS Chr1 17907937 T-A Hetero INTERGENIC
SBS Chr1 21853446 C-A Hetero INTERGENIC
SBS Chr1 21853448 G-A Hetero INTERGENIC
SBS Chr1 21853452 T-A Hetero INTERGENIC
SBS Chr1 24137702 A-T Hetero INTRON
SBS Chr1 27063907 A-T Hetero INTERGENIC
SBS Chr3 4097313 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g058000
SBS Chr3 23124494 A-G Hetero INTERGENIC
SBS Chr4 3505842 C-T Homo INTERGENIC
SBS Chr4 18364753 A-T Hetero INTERGENIC
SBS Chr4 20209762 A-T Hetero INTRON
SBS Chr4 28749599 T-A Homo INTERGENIC
SBS Chr5 14043408 A-T Homo INTERGENIC
SBS Chr5 27639274 C-A Hetero INTERGENIC
SBS Chr5 27639275 T-A Hetero INTERGENIC
SBS Chr6 2074062 A-T Homo INTERGENIC
SBS Chr6 29453458 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g272900
SBS Chr6 29528184 C-A Hetero INTERGENIC
SBS Chr7 256475 T-C Homo INTERGENIC
SBS Chr7 25731810 C-T Hetero INTERGENIC
SBS Chr8 15818008 C-T Hetero INTERGENIC
SBS Chr8 19278624 C-T Hetero INTERGENIC
SBS Chr8 24292012 A-T Homo INTERGENIC
SBS Chr9 6169200 C-T Hetero INTERGENIC
SBS Chr9 10395636 G-A Hetero INTERGENIC
SBS Chr9 22096581 G-A Hetero INTRON
SBS Chr9 22096582 G-T Hetero INTRON
SBS Chr9 22570450 T-C Hetero UTR_5_PRIME
SBS Chr10 5037379 G-A Hetero INTERGENIC
SBS Chr11 2095841 G-A Homo INTERGENIC
SBS Chr11 3933161 G-A Homo INTERGENIC
SBS Chr11 8442683 A-G Homo SYNONYMOUS_CODING
SBS Chr11 17373340 T-C Hetero INTRON
SBS Chr11 23285589 T-C Hetero INTERGENIC
SBS Chr11 24039479 C-T Hetero INTERGENIC
SBS Chr12 11057727 T-G Homo INTERGENIC
SBS Chr12 13747639 G-A Hetero INTERGENIC
SBS Chr12 13949238 T-A Hetero INTERGENIC
SBS Chr12 18345080 C-T Hetero INTERGENIC
SBS Chr12 19356914 C-G Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 2095742 2095743 1
Deletion Chr11 2505174 2505175 1
Deletion Chr10 8269928 8269930 2
Deletion Chr11 9692416 9692425 9
Deletion Chr9 11191001 11206000 14999 OsKitaake09g069900
Deletion Chr6 15253957 15253967 10
Deletion Chr3 15470802 15470804 2
Deletion Chr3 15941426 15941439 13
Deletion Chr3 18398344 18398347 3
Deletion Chr12 19600589 19600591 2
Deletion Chr8 20985396 20985398 2
Deletion Chr4 30434806 30434807 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 43985976 43985981 4
Insertion Chr3 32893082 32893084 1
Insertion Chr11 16709257 16709260 2
Insertion Chr12 22409533 22409540 6

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 12635797 12904382
Inversion Chr5 13524303 14043081
Inversion Chr5 13524319 13973569 OsKitaake05g108100
Inversion Chr12 14107478 14111408

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 26888701 Chr5 1241947 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3296655	G-A	Homo	INTERGENIC
SBS	Chr1	17907937	T-A	Hetero	INTERGENIC
SBS	Chr1	21853446	C-A	Hetero	INTERGENIC
SBS	Chr1	21853448	G-A	Hetero	INTERGENIC
SBS	Chr1	21853452	T-A	Hetero	INTERGENIC
SBS	Chr1	24137702	A-T	Hetero	INTRON
SBS	Chr1	27063907	A-T	Hetero	INTERGENIC
SBS	Chr3	4097313	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g058000
SBS	Chr3	23124494	A-G	Hetero	INTERGENIC
SBS	Chr4	3505842	C-T	Homo	INTERGENIC
SBS	Chr4	18364753	A-T	Hetero	INTERGENIC
SBS	Chr4	20209762	A-T	Hetero	INTRON
SBS	Chr4	28749599	T-A	Homo	INTERGENIC
SBS	Chr5	14043408	A-T	Homo	INTERGENIC
SBS	Chr5	27639274	C-A	Hetero	INTERGENIC
SBS	Chr5	27639275	T-A	Hetero	INTERGENIC
SBS	Chr6	2074062	A-T	Homo	INTERGENIC
SBS	Chr6	29453458	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g272900
SBS	Chr6	29528184	C-A	Hetero	INTERGENIC
SBS	Chr7	256475	T-C	Homo	INTERGENIC
SBS	Chr7	25731810	C-T	Hetero	INTERGENIC
SBS	Chr8	15818008	C-T	Hetero	INTERGENIC
SBS	Chr8	19278624	C-T	Hetero	INTERGENIC
SBS	Chr8	24292012	A-T	Homo	INTERGENIC
SBS	Chr9	6169200	C-T	Hetero	INTERGENIC
SBS	Chr9	10395636	G-A	Hetero	INTERGENIC
SBS	Chr9	22096581	G-A	Hetero	INTRON
SBS	Chr9	22096582	G-T	Hetero	INTRON
SBS	Chr9	22570450	T-C	Hetero	UTR_5_PRIME
SBS	Chr10	5037379	G-A	Hetero	INTERGENIC
SBS	Chr11	2095841	G-A	Homo	INTERGENIC
SBS	Chr11	3933161	G-A	Homo	INTERGENIC
SBS	Chr11	8442683	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr11	17373340	T-C	Hetero	INTRON
SBS	Chr11	23285589	T-C	Hetero	INTERGENIC
SBS	Chr11	24039479	C-T	Hetero	INTERGENIC
SBS	Chr12	11057727	T-G	Homo	INTERGENIC
SBS	Chr12	13747639	G-A	Hetero	INTERGENIC
SBS	Chr12	13949238	T-A	Hetero	INTERGENIC
SBS	Chr12	18345080	C-T	Hetero	INTERGENIC
SBS	Chr12	19356914	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	2095742	2095743	1
Deletion	Chr11	2505174	2505175	1
Deletion	Chr10	8269928	8269930	2
Deletion	Chr11	9692416	9692425	9
Deletion	Chr9	11191001	11206000	14999	OsKitaake09g069900
Deletion	Chr6	15253957	15253967	10
Deletion	Chr3	15470802	15470804	2
Deletion	Chr3	15941426	15941439	13
Deletion	Chr3	18398344	18398347	3
Deletion	Chr12	19600589	19600591	2
Deletion	Chr8	20985396	20985398	2
Deletion	Chr4	30434806	30434807	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	12635797	12904382
Inversion	Chr5	13524303	14043081
Inversion	Chr5	13524319	13973569	OsKitaake05g108100
Inversion	Chr12	14107478	14111408

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes