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Mutant Information

Mutant Name	FN2310 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2310 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8294186 T-A Homo INTERGENIC
SBS Chr1 14787014 G-T Hetero INTERGENIC
SBS Chr1 30290876 G-A Hetero INTERGENIC
SBS Chr1 30431975 G-A Hetero INTERGENIC
SBS Chr1 37247664 G-A Homo INTERGENIC
SBS Chr2 1863187 C-T Hetero INTERGENIC
SBS Chr2 6687207 C-T Hetero INTERGENIC
SBS Chr2 14925937 A-G Homo INTERGENIC
SBS Chr2 19718185 C-A Homo INTERGENIC
SBS Chr2 20069343 T-C Hetero INTERGENIC
SBS Chr2 20311458 C-T Homo INTRON
SBS Chr2 20506604 G-T Homo INTERGENIC
SBS Chr2 36958223 C-G Homo INTERGENIC
SBS Chr3 3212169 G-C Hetero INTERGENIC
SBS Chr3 18361414 C-T Hetero INTERGENIC
SBS Chr3 19038334 C-T Hetero INTERGENIC
SBS Chr3 37588777 A-G Homo NON_SYNONYMOUS_CODING OsKitaake03g422100
SBS Chr4 16359264 C-A Hetero INTERGENIC
SBS Chr5 12300266 C-A Homo INTERGENIC
SBS Chr5 14102399 C-T Homo INTERGENIC
SBS Chr5 18823965 G-A Hetero INTERGENIC
SBS Chr5 21588983 G-T Hetero INTERGENIC
SBS Chr6 4548497 A-C Hetero INTERGENIC
SBS Chr6 12975630 G-A Hetero INTERGENIC
SBS Chr7 15739545 C-G Hetero INTERGENIC
SBS Chr7 15998868 C-T Hetero INTERGENIC
SBS Chr7 20294003 C-A Hetero INTERGENIC
SBS Chr7 27310411 G-A Homo INTERGENIC
SBS Chr9 36137 T-C Hetero INTERGENIC
SBS Chr9 8628192 C-A Hetero INTERGENIC
SBS Chr9 14336729 C-T Homo INTERGENIC
SBS Chr9 18036178 T-C Hetero INTRON
SBS Chr10 7269537 T-C Hetero INTERGENIC
SBS Chr10 16068096 G-A Hetero INTERGENIC
SBS Chr11 2039643 A-T Hetero INTRON
SBS Chr12 81587 C-T Hetero INTERGENIC
SBS Chr12 16217711 T-C Hetero INTERGENIC
SBS Chr12 20747529 G-A Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1175187 1175189 2
Deletion Chr11 2024003 2024005 2
Deletion Chr12 2182303 2182304 1
Deletion Chr5 5845194 5845196 2
Deletion Chr1 6226499 6226500 1
Deletion Chr1 7096503 7096513 10 OsKitaake01g088800
Deletion Chr3 7829387 7829393 6
Deletion Chr12 7859632 7859636 4
Deletion Chr4 10735513 10735518 5
Deletion Chr8 14281606 14281608 2
Deletion Chr7 16383569 16383588 19
Deletion Chr8 17276937 17276938 1
Deletion Chr11 17344138 17344145 7
Deletion Chr2 20265543 20265551 8
Deletion Chr5 23984447 23984452 5
Deletion Chr11 25907120 25907144 24
Deletion Chr1 27067848 27067851 3
Deletion Chr2 28675269 28675270 1
Deletion Chr1 32437140 32437167 27

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 26682291 26682294 2
Insertion Chr5 11861857 11861859 1
Insertion Chr8 469848 469851 2
Insertion Chr8 22307073 22307077 3
Insertion Chr12 12455419 12455421 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 9028011 9049710
Inversion Chr12 9028034 9049723
Inversion Chr4 30806512 31587212 2
Inversion Chr4 30806522 31587222 2

Translocations: 8

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 5195641 Chr6 4606619 OsKitaake11g065301
Translocation Chr11 5196191 Chr6 4606614
Translocation Chr9 12120545 Chr8 8574335 OsKitaake09g078400
Translocation Chr11 12519668 Chr4 10424083
Translocation Chr10 13160974 Chr4 9662346
Translocation Chr12 14586758 Chr9 5473823 OsKitaake12g116800
Translocation Chr11 18113440 Chr9 502308
Translocation Chr12 26065775 Chr8 1139509 OsKitaake12g215700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8294186	T-A	Homo	INTERGENIC
SBS	Chr1	14787014	G-T	Hetero	INTERGENIC
SBS	Chr1	30290876	G-A	Hetero	INTERGENIC
SBS	Chr1	30431975	G-A	Hetero	INTERGENIC
SBS	Chr1	37247664	G-A	Homo	INTERGENIC
SBS	Chr2	1863187	C-T	Hetero	INTERGENIC
SBS	Chr2	6687207	C-T	Hetero	INTERGENIC
SBS	Chr2	14925937	A-G	Homo	INTERGENIC
SBS	Chr2	19718185	C-A	Homo	INTERGENIC
SBS	Chr2	20069343	T-C	Hetero	INTERGENIC
SBS	Chr2	20311458	C-T	Homo	INTRON
SBS	Chr2	20506604	G-T	Homo	INTERGENIC
SBS	Chr2	36958223	C-G	Homo	INTERGENIC
SBS	Chr3	3212169	G-C	Hetero	INTERGENIC
SBS	Chr3	18361414	C-T	Hetero	INTERGENIC
SBS	Chr3	19038334	C-T	Hetero	INTERGENIC
SBS	Chr3	37588777	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g422100
SBS	Chr4	16359264	C-A	Hetero	INTERGENIC
SBS	Chr5	12300266	C-A	Homo	INTERGENIC
SBS	Chr5	14102399	C-T	Homo	INTERGENIC
SBS	Chr5	18823965	G-A	Hetero	INTERGENIC
SBS	Chr5	21588983	G-T	Hetero	INTERGENIC
SBS	Chr6	4548497	A-C	Hetero	INTERGENIC
SBS	Chr6	12975630	G-A	Hetero	INTERGENIC
SBS	Chr7	15739545	C-G	Hetero	INTERGENIC
SBS	Chr7	15998868	C-T	Hetero	INTERGENIC
SBS	Chr7	20294003	C-A	Hetero	INTERGENIC
SBS	Chr7	27310411	G-A	Homo	INTERGENIC
SBS	Chr9	36137	T-C	Hetero	INTERGENIC
SBS	Chr9	8628192	C-A	Hetero	INTERGENIC
SBS	Chr9	14336729	C-T	Homo	INTERGENIC
SBS	Chr9	18036178	T-C	Hetero	INTRON
SBS	Chr10	7269537	T-C	Hetero	INTERGENIC
SBS	Chr10	16068096	G-A	Hetero	INTERGENIC
SBS	Chr11	2039643	A-T	Hetero	INTRON
SBS	Chr12	81587	C-T	Hetero	INTERGENIC
SBS	Chr12	16217711	T-C	Hetero	INTERGENIC
SBS	Chr12	20747529	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1175187	1175189	2
Deletion	Chr11	2024003	2024005	2
Deletion	Chr12	2182303	2182304	1
Deletion	Chr5	5845194	5845196	2
Deletion	Chr1	6226499	6226500	1
Deletion	Chr1	7096503	7096513	10	OsKitaake01g088800
Deletion	Chr3	7829387	7829393	6
Deletion	Chr12	7859632	7859636	4
Deletion	Chr4	10735513	10735518	5
Deletion	Chr8	14281606	14281608	2
Deletion	Chr7	16383569	16383588	19
Deletion	Chr8	17276937	17276938	1
Deletion	Chr11	17344138	17344145	7
Deletion	Chr2	20265543	20265551	8
Deletion	Chr5	23984447	23984452	5
Deletion	Chr11	25907120	25907144	24
Deletion	Chr1	27067848	27067851	3
Deletion	Chr2	28675269	28675270	1
Deletion	Chr1	32437140	32437167	27

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	9028011	9049710
Inversion	Chr12	9028034	9049723
Inversion	Chr4	30806512	31587212	2
Inversion	Chr4	30806522	31587222	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes