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Mutant Information

Mutant Name	FN2311 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2311 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 19326713 G-A Hetero INTRON
SBS Chr1 22370003 T-C Hetero INTERGENIC
SBS Chr1 27369506 C-T Homo INTERGENIC
SBS Chr1 27734586 G-C Hetero INTERGENIC
SBS Chr1 42745214 A-C Hetero INTRON
SBS Chr2 13866850 A-T Homo INTERGENIC
SBS Chr2 23912093 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g234700
SBS Chr2 27718588 T-A Hetero INTERGENIC
SBS Chr3 19728010 C-G Hetero INTERGENIC
SBS Chr3 19848119 C-T Hetero INTERGENIC
SBS Chr3 24226181 G-A Hetero INTERGENIC
SBS Chr3 31535857 G-A Homo INTERGENIC
SBS Chr4 2837689 G-A Hetero INTERGENIC
SBS Chr4 29806099 C-A Hetero INTERGENIC
SBS Chr4 35218673 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g297000
SBS Chr4 35218674 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g297000
SBS Chr5 8991145 G-A Hetero INTERGENIC
SBS Chr5 13524060 C-T Hetero INTERGENIC
SBS Chr5 26700564 C-A Homo NON_SYNONYMOUS_CODING OsKitaake05g238300
SBS Chr6 4213855 A-G Homo INTERGENIC
SBS Chr6 12673191 C-T Hetero INTERGENIC
SBS Chr6 20562637 T-C Hetero INTERGENIC
SBS Chr7 2876436 C-T Homo INTERGENIC
SBS Chr7 18231715 C-T Hetero INTERGENIC
SBS Chr8 7543889 T-C Hetero INTERGENIC
SBS Chr8 16761277 T-C Hetero INTERGENIC
SBS Chr8 19563526 C-A Hetero INTERGENIC
SBS Chr8 25769060 G-A Hetero INTERGENIC
SBS Chr8 26957365 G-T Homo INTERGENIC
SBS Chr9 15672947 G-A Homo INTERGENIC
SBS Chr9 18682386 C-T Hetero SYNONYMOUS_CODING
SBS Chr10 6034634 G-A Hetero INTERGENIC
SBS Chr10 13801464 G-A Hetero INTERGENIC
SBS Chr10 19129185 T-A Hetero INTERGENIC
SBS Chr11 14674067 G-A Homo INTERGENIC
SBS Chr11 22918981 T-G Hetero INTERGENIC
SBS Chr11 28173274 G-A Hetero INTERGENIC
SBS Chr12 9198220 T-C Homo INTERGENIC
SBS Chr12 14784363 G-A Homo INTERGENIC
SBS Chr12 14784364 G-A Homo INTERGENIC
SBS Chr12 16571913 C-A Hetero INTERGENIC
SBS Chr12 20697400 T-A Hetero UTR_3_PRIME

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 5043171 5043182 11
Deletion Chr1 7473984 7473987 3
Deletion Chr8 10833610 10833619 9
Deletion Chr6 12404663 12404665 2
Deletion Chr6 12681418 12681421 3
Deletion Chr3 13005259 13005261 2
Deletion Chr8 13102744 13102754 10
Deletion Chr4 13543842 13543846 4
Deletion Chr1 13684134 13684135 1
Deletion Chr3 19701693 19701694 1
Deletion Chr2 22388116 22388127 11 OsKitaake02g216700
Deletion Chr10 22451047 22451054 7
Deletion Chr5 25391789 25391792 3
Deletion Chr3 25840885 25840892 7 OsKitaake03g272800
Deletion Chr11 25988593 25988594 1
Deletion Chr4 26477733 26477736 3
Deletion Chr1 29178420 29178422 2
Deletion Chr1 31058900 31058904 4
Deletion Chr1 34626483 34626492 9
Deletion Chr3 37334098 37334103 5 OsKitaake03g418800
Deletion Chr1 39836220 39836222 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 20981909 20981912 2
Insertion Chr3 23794776 23794779 2
Insertion Chr3 24362816 24362819 2
Insertion Chr9 15411109 15411112 2
Insertion Chr12 8903649 8903652 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 3216749 Chr2 6391771 OsKitaake12g045900
Translocation Chr12 3216754 Chr2 6382346 OsKitaake12g045900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19326713	G-A	Hetero	INTRON
SBS	Chr1	22370003	T-C	Hetero	INTERGENIC
SBS	Chr1	27369506	C-T	Homo	INTERGENIC
SBS	Chr1	27734586	G-C	Hetero	INTERGENIC
SBS	Chr1	42745214	A-C	Hetero	INTRON
SBS	Chr2	13866850	A-T	Homo	INTERGENIC
SBS	Chr2	23912093	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g234700
SBS	Chr2	27718588	T-A	Hetero	INTERGENIC
SBS	Chr3	19728010	C-G	Hetero	INTERGENIC
SBS	Chr3	19848119	C-T	Hetero	INTERGENIC
SBS	Chr3	24226181	G-A	Hetero	INTERGENIC
SBS	Chr3	31535857	G-A	Homo	INTERGENIC
SBS	Chr4	2837689	G-A	Hetero	INTERGENIC
SBS	Chr4	29806099	C-A	Hetero	INTERGENIC
SBS	Chr4	35218673	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g297000
SBS	Chr4	35218674	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g297000
SBS	Chr5	8991145	G-A	Hetero	INTERGENIC
SBS	Chr5	13524060	C-T	Hetero	INTERGENIC
SBS	Chr5	26700564	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g238300
SBS	Chr6	4213855	A-G	Homo	INTERGENIC
SBS	Chr6	12673191	C-T	Hetero	INTERGENIC
SBS	Chr6	20562637	T-C	Hetero	INTERGENIC
SBS	Chr7	2876436	C-T	Homo	INTERGENIC
SBS	Chr7	18231715	C-T	Hetero	INTERGENIC
SBS	Chr8	7543889	T-C	Hetero	INTERGENIC
SBS	Chr8	16761277	T-C	Hetero	INTERGENIC
SBS	Chr8	19563526	C-A	Hetero	INTERGENIC
SBS	Chr8	25769060	G-A	Hetero	INTERGENIC
SBS	Chr8	26957365	G-T	Homo	INTERGENIC
SBS	Chr9	15672947	G-A	Homo	INTERGENIC
SBS	Chr9	18682386	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr10	6034634	G-A	Hetero	INTERGENIC
SBS	Chr10	13801464	G-A	Hetero	INTERGENIC
SBS	Chr10	19129185	T-A	Hetero	INTERGENIC
SBS	Chr11	14674067	G-A	Homo	INTERGENIC
SBS	Chr11	22918981	T-G	Hetero	INTERGENIC
SBS	Chr11	28173274	G-A	Hetero	INTERGENIC
SBS	Chr12	9198220	T-C	Homo	INTERGENIC
SBS	Chr12	14784363	G-A	Homo	INTERGENIC
SBS	Chr12	14784364	G-A	Homo	INTERGENIC
SBS	Chr12	16571913	C-A	Hetero	INTERGENIC
SBS	Chr12	20697400	T-A	Hetero	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	5043171	5043182	11
Deletion	Chr1	7473984	7473987	3
Deletion	Chr8	10833610	10833619	9
Deletion	Chr6	12404663	12404665	2
Deletion	Chr6	12681418	12681421	3
Deletion	Chr3	13005259	13005261	2
Deletion	Chr8	13102744	13102754	10
Deletion	Chr4	13543842	13543846	4
Deletion	Chr1	13684134	13684135	1
Deletion	Chr3	19701693	19701694	1
Deletion	Chr2	22388116	22388127	11	OsKitaake02g216700
Deletion	Chr10	22451047	22451054	7
Deletion	Chr5	25391789	25391792	3
Deletion	Chr3	25840885	25840892	7	OsKitaake03g272800
Deletion	Chr11	25988593	25988594	1
Deletion	Chr4	26477733	26477736	3
Deletion	Chr1	29178420	29178422	2
Deletion	Chr1	31058900	31058904	4
Deletion	Chr1	34626483	34626492	9
Deletion	Chr3	37334098	37334103	5	OsKitaake03g418800
Deletion	Chr1	39836220	39836222	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	3216749	Chr2	6391771	OsKitaake12g045900
Translocation	Chr12	3216754	Chr2	6382346	OsKitaake12g045900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes