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| Mutant Information |
|---|
| Mutant Name | FN2312 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2312 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 37
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 7761570 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 13385033 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 29895159 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 30417788 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 30660461 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 31698059 | T-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 33317886 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 42504165 | A-T | Homo | INTRON | |
| SBS | Chr1 | 42637487 | C-T | Homo | INTRON | |
| SBS | Chr2 | 19846051 | G-C | Homo | INTERGENIC | |
| SBS | Chr2 | 22186169 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 24492807 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr3 | 11825174 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 11825175 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 23382050 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 8963528 | A-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g046300 |
| SBS | Chr4 | 12735204 | C-G | Homo | INTERGENIC | |
| SBS | Chr4 | 13757732 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 16339053 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 9617016 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 10418241 | A-G | Homo | INTERGENIC | |
| SBS | Chr5 | 25713525 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 617875 | C-T | Hetero | INTRON | |
| SBS | Chr6 | 18738908 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 21998168 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 3068903 | G-T | Homo | UTR_3_PRIME | |
| SBS | Chr7 | 4299630 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g054000 |
| SBS | Chr7 | 14954831 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 6464042 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 8468974 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 19455974 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 5844361 | A-T | Homo | INTRON | |
| SBS | Chr9 | 5844363 | A-T | Homo | INTRON | |
| SBS | Chr9 | 10647655 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 3335340 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 19878516 | T-A | Homo | INTERGENIC | |
| SBS | Chr12 | 20362089 | C-T | Hetero | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 209892 | 209893 | 1 | OsKitaake05g002700 |
| Deletion | Chr11 | 2476626 | 2476631 | 5 | |
| Deletion | Chr7 | 3307007 | 3307011 | 4 | |
| Deletion | Chr11 | 4255239 | 4255250 | 11 | |
| Deletion | Chr9 | 5839913 | 5839936 | 23 | |
| Deletion | Chr10 | 7735883 | 7735891 | 8 | |
| Deletion | Chr10 | 9387508 | 9387511 | 3 | |
| Deletion | Chr9 | 14301461 | 14301462 | 1 | |
| Deletion | Chr3 | 17717471 | 17717472 | 1 | |
| Deletion | Chr6 | 19572654 | 19572657 | 3 | |
| Deletion | Chr10 | 19609627 | 19609628 | 1 | |
| Deletion | Chr4 | 26881690 | 26881701 | 11 | OsKitaake04g194800 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 34041269 | 34041272 | 2 | |
| Insertion | Chr7 | 25703853 | 25703856 | 2 | |
| Insertion | Chr8 | 17026628 | 17026631 | 2 |