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Mutant Information

Mutant Name	FN2313 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2313 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7784970 G-A Homo INTERGENIC
SBS Chr1 7784976 G-T Homo INTERGENIC
SBS Chr2 719780 C-T Hetero INTERGENIC
SBS Chr2 11468068 A-G Hetero INTERGENIC
SBS Chr2 22952621 T-G Hetero INTERGENIC
SBS Chr2 32681488 G-A Hetero UTR_3_PRIME
SBS Chr2 32681489 C-A Hetero UTR_3_PRIME
SBS Chr3 2123606 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g030500
SBS Chr3 10853373 C-T Hetero INTERGENIC
SBS Chr3 13665768 A-C Hetero UTR_3_PRIME
SBS Chr4 1314686 G-C Hetero INTERGENIC
SBS Chr4 11732360 C-T Hetero INTERGENIC
SBS Chr4 19439444 A-C Hetero INTERGENIC
SBS Chr4 25988598 T-C Hetero INTERGENIC
SBS Chr5 17975404 C-G Hetero UTR_3_PRIME
SBS Chr5 28326897 A-G Hetero UTR_3_PRIME
SBS Chr6 1122199 T-C Hetero INTERGENIC
SBS Chr7 15106715 T-A Homo INTRON
SBS Chr7 22129370 C-T Hetero INTERGENIC
SBS Chr7 24587437 G-A Homo INTERGENIC
SBS Chr8 21973156 G-T Hetero INTERGENIC
SBS Chr8 24979061 T-C Hetero INTERGENIC
SBS Chr9 4652768 G-A Hetero INTERGENIC
SBS Chr9 12013101 G-T Hetero UTR_3_PRIME
SBS Chr9 21234805 C-G Hetero INTERGENIC
SBS Chr10 4163208 C-T Hetero INTERGENIC
SBS Chr10 8549233 T-C Hetero INTERGENIC
SBS Chr11 13303735 G-A Homo INTERGENIC
SBS Chr11 16531486 A-G Homo INTERGENIC
SBS Chr11 23414490 C-T Homo INTERGENIC
SBS Chr11 23849828 A-G Hetero INTERGENIC
SBS Chr12 8930441 C-T Hetero UTR_5_PRIME
SBS Chr12 16201586 G-T Hetero INTERGENIC
SBS Chr12 20062862 A-G Hetero INTERGENIC
SBS Chr12 23328006 G-A Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 1712001 1743000 30999 2
Deletion Chr10 2077492 2077499 7
Deletion Chr8 5240001 5321000 80999 10
Deletion Chr1 6030540 6030548 8
Deletion Chr6 9648149 9648155 6
Deletion Chr9 12538181 12538203 22
Deletion Chr2 14150251 14150256 5
Deletion Chr8 17097738 17097740 2
Deletion Chr9 21351857 21351862 5

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 14189235 14189238 2
Insertion Chr7 2143722 2143724 1
Insertion Chr10 9480029 9480032 2
Insertion Chr11 7413998 7414001 2
Insertion Chr8 1396065 1396067 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 32151368 32679834 2
Inversion Chr2 32151407 32679885 2

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 10006036 Chr2 33976881 2
Translocation Chr9 18659037 Chr8 5239425
Translocation Chr11 24125894 Chr8 25272364 OsKitaake11g193900
Translocation Chr11 24125907 Chr8 25271694 OsKitaake11g193900
Translocation Chr3 28857178 Chr2 33976876 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7784970	G-A	Homo	INTERGENIC
SBS	Chr1	7784976	G-T	Homo	INTERGENIC
SBS	Chr2	719780	C-T	Hetero	INTERGENIC
SBS	Chr2	11468068	A-G	Hetero	INTERGENIC
SBS	Chr2	22952621	T-G	Hetero	INTERGENIC
SBS	Chr2	32681488	G-A	Hetero	UTR_3_PRIME
SBS	Chr2	32681489	C-A	Hetero	UTR_3_PRIME
SBS	Chr3	2123606	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g030500
SBS	Chr3	10853373	C-T	Hetero	INTERGENIC
SBS	Chr3	13665768	A-C	Hetero	UTR_3_PRIME
SBS	Chr4	1314686	G-C	Hetero	INTERGENIC
SBS	Chr4	11732360	C-T	Hetero	INTERGENIC
SBS	Chr4	19439444	A-C	Hetero	INTERGENIC
SBS	Chr4	25988598	T-C	Hetero	INTERGENIC
SBS	Chr5	17975404	C-G	Hetero	UTR_3_PRIME
SBS	Chr5	28326897	A-G	Hetero	UTR_3_PRIME
SBS	Chr6	1122199	T-C	Hetero	INTERGENIC
SBS	Chr7	15106715	T-A	Homo	INTRON
SBS	Chr7	22129370	C-T	Hetero	INTERGENIC
SBS	Chr7	24587437	G-A	Homo	INTERGENIC
SBS	Chr8	21973156	G-T	Hetero	INTERGENIC
SBS	Chr8	24979061	T-C	Hetero	INTERGENIC
SBS	Chr9	4652768	G-A	Hetero	INTERGENIC
SBS	Chr9	12013101	G-T	Hetero	UTR_3_PRIME
SBS	Chr9	21234805	C-G	Hetero	INTERGENIC
SBS	Chr10	4163208	C-T	Hetero	INTERGENIC
SBS	Chr10	8549233	T-C	Hetero	INTERGENIC
SBS	Chr11	13303735	G-A	Homo	INTERGENIC
SBS	Chr11	16531486	A-G	Homo	INTERGENIC
SBS	Chr11	23414490	C-T	Homo	INTERGENIC
SBS	Chr11	23849828	A-G	Hetero	INTERGENIC
SBS	Chr12	8930441	C-T	Hetero	UTR_5_PRIME
SBS	Chr12	16201586	G-T	Hetero	INTERGENIC
SBS	Chr12	20062862	A-G	Hetero	INTERGENIC
SBS	Chr12	23328006	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1712001	1743000	30999	2
Deletion	Chr10	2077492	2077499	7
Deletion	Chr8	5240001	5321000	80999	10
Deletion	Chr1	6030540	6030548	8
Deletion	Chr6	9648149	9648155	6
Deletion	Chr9	12538181	12538203	22
Deletion	Chr2	14150251	14150256	5
Deletion	Chr8	17097738	17097740	2
Deletion	Chr9	21351857	21351862	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	32151368	32679834	2
Inversion	Chr2	32151407	32679885	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes