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Mutant Information

Mutant Name	FN2315 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2315 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1168196 A-C Hetero INTERGENIC
SBS Chr1 19156150 A-G Hetero INTERGENIC
SBS Chr1 19379979 C-T Hetero INTERGENIC
SBS Chr1 37856344 G-T Hetero INTERGENIC
SBS Chr1 41865656 C-T Homo INTERGENIC
SBS Chr1 42887797 A-C Homo INTERGENIC
SBS Chr2 720720 G-A Homo INTERGENIC
SBS Chr2 10106545 A-G Hetero INTERGENIC
SBS Chr2 12501841 G-A Hetero INTERGENIC
SBS Chr2 34137127 A-T Homo NON_SYNONYMOUS_CODING OsKitaake02g354400
SBS Chr3 36558587 T-G Hetero INTERGENIC
SBS Chr4 6287514 C-T Hetero INTERGENIC
SBS Chr4 27316729 C-A Hetero INTERGENIC
SBS Chr5 6582489 A-T Homo INTERGENIC
SBS Chr7 17444160 T-A Homo INTERGENIC
SBS Chr7 17444161 C-T Homo INTERGENIC
SBS Chr7 17444162 G-T Homo INTERGENIC
SBS Chr8 7935826 T-A Hetero INTRON
SBS Chr8 16431021 G-C Hetero INTERGENIC
SBS Chr9 7465603 A-G Hetero INTERGENIC
SBS Chr9 8316758 A-C Hetero INTERGENIC
SBS Chr9 13676038 G-A Hetero INTERGENIC
SBS Chr9 22233152 A-T Homo INTERGENIC
SBS Chr10 7283781 C-T Hetero INTERGENIC
SBS Chr11 9079668 G-A Hetero INTERGENIC
SBS Chr11 14908579 G-A Hetero INTERGENIC
SBS Chr11 18844797 T-C Hetero INTERGENIC
SBS Chr12 12456397 T-C Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 274204 274209 5
Deletion Chr1 8265858 8265859 1
Deletion Chr7 8553001 8563000 9999
Deletion Chr4 8698842 8698844 2
Deletion Chr9 9520998 9521020 22
Deletion Chr4 9781773 9781774 1
Deletion Chr11 10416774 10416775 1
Deletion Chr11 10606061 10606067 6
Deletion Chr11 10842579 10842582 3
Deletion Chr9 11322603 11322608 5
Deletion Chr8 18675001 18912000 236999 24
Deletion Chr2 19975354 19975359 5
Deletion Chr11 23192999 23193002 3
Deletion Chr1 24928935 24928940 5
Deletion Chr5 30167792 30167793 1
Deletion Chr1 32974789 32974792 3
Deletion Chr1 37826988 37827006 18

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 7585156 7585159 2
Insertion Chr4 21673677 21673680 2
Insertion Chr6 6927973 6927975 1
Insertion Chr9 7810494 7810497 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 2123756 2807878 OsKitaake02g032100
Inversion Chr2 2123760 2807890 OsKitaake02g032100
Inversion Chr7 8492117 8552329
Inversion Chr7 8492130 8562799
Inversion Chr4 22161434 22181765
Inversion Chr4 22161450 22181776

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1168196	A-C	Hetero	INTERGENIC
SBS	Chr1	19156150	A-G	Hetero	INTERGENIC
SBS	Chr1	19379979	C-T	Hetero	INTERGENIC
SBS	Chr1	37856344	G-T	Hetero	INTERGENIC
SBS	Chr1	41865656	C-T	Homo	INTERGENIC
SBS	Chr1	42887797	A-C	Homo	INTERGENIC
SBS	Chr2	720720	G-A	Homo	INTERGENIC
SBS	Chr2	10106545	A-G	Hetero	INTERGENIC
SBS	Chr2	12501841	G-A	Hetero	INTERGENIC
SBS	Chr2	34137127	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g354400
SBS	Chr3	36558587	T-G	Hetero	INTERGENIC
SBS	Chr4	6287514	C-T	Hetero	INTERGENIC
SBS	Chr4	27316729	C-A	Hetero	INTERGENIC
SBS	Chr5	6582489	A-T	Homo	INTERGENIC
SBS	Chr7	17444160	T-A	Homo	INTERGENIC
SBS	Chr7	17444161	C-T	Homo	INTERGENIC
SBS	Chr7	17444162	G-T	Homo	INTERGENIC
SBS	Chr8	7935826	T-A	Hetero	INTRON
SBS	Chr8	16431021	G-C	Hetero	INTERGENIC
SBS	Chr9	7465603	A-G	Hetero	INTERGENIC
SBS	Chr9	8316758	A-C	Hetero	INTERGENIC
SBS	Chr9	13676038	G-A	Hetero	INTERGENIC
SBS	Chr9	22233152	A-T	Homo	INTERGENIC
SBS	Chr10	7283781	C-T	Hetero	INTERGENIC
SBS	Chr11	9079668	G-A	Hetero	INTERGENIC
SBS	Chr11	14908579	G-A	Hetero	INTERGENIC
SBS	Chr11	18844797	T-C	Hetero	INTERGENIC
SBS	Chr12	12456397	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	274204	274209	5
Deletion	Chr1	8265858	8265859	1
Deletion	Chr7	8553001	8563000	9999
Deletion	Chr4	8698842	8698844	2
Deletion	Chr9	9520998	9521020	22
Deletion	Chr4	9781773	9781774	1
Deletion	Chr11	10416774	10416775	1
Deletion	Chr11	10606061	10606067	6
Deletion	Chr11	10842579	10842582	3
Deletion	Chr9	11322603	11322608	5
Deletion	Chr8	18675001	18912000	236999	24
Deletion	Chr2	19975354	19975359	5
Deletion	Chr11	23192999	23193002	3
Deletion	Chr1	24928935	24928940	5
Deletion	Chr5	30167792	30167793	1
Deletion	Chr1	32974789	32974792	3
Deletion	Chr1	37826988	37827006	18

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	2123756	2807878	OsKitaake02g032100
Inversion	Chr2	2123760	2807890	OsKitaake02g032100
Inversion	Chr7	8492117	8552329
Inversion	Chr7	8492130	8562799
Inversion	Chr4	22161434	22181765
Inversion	Chr4	22161450	22181776

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes