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Mutant Information

Mutant Name	FN2316 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2316 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5848183 C-G Hetero INTERGENIC
SBS Chr1 10244937 C-A Homo INTERGENIC
SBS Chr1 25422277 A-G Hetero INTERGENIC
SBS Chr1 35241293 C-T Homo INTERGENIC
SBS Chr1 43579582 C-T Hetero INTERGENIC
SBS Chr2 9489017 C-T Hetero INTERGENIC
SBS Chr2 18870235 G-A Homo INTERGENIC
SBS Chr2 21296077 T-A Homo INTERGENIC
SBS Chr2 24846543 G-T Hetero INTERGENIC
SBS Chr2 24979427 C-G Hetero INTERGENIC
SBS Chr3 3836882 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g054500
SBS Chr3 18451139 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 30738882 G-A Homo INTERGENIC
SBS Chr3 33644885 C-T Homo INTERGENIC
SBS Chr4 17285422 A-G Hetero INTERGENIC
SBS Chr4 19951610 T-C Hetero INTERGENIC
SBS Chr5 4375946 G-T Hetero INTERGENIC
SBS Chr6 2110898 T-A Hetero INTERGENIC
SBS Chr6 4580923 G-A Hetero INTERGENIC
SBS Chr6 14307104 T-C Homo INTERGENIC
SBS Chr6 14729481 G-A Homo INTERGENIC
SBS Chr7 5619372 G-T Homo INTERGENIC
SBS Chr7 17895862 C-T Hetero INTERGENIC
SBS Chr8 12187498 T-C Homo INTERGENIC
SBS Chr8 17221323 T-C Homo INTERGENIC
SBS Chr9 2205254 C-T Hetero INTRON
SBS Chr9 5239896 T-C Hetero INTERGENIC
SBS Chr9 12420485 C-T Hetero INTERGENIC
SBS Chr9 14065054 C-T Homo INTERGENIC
SBS Chr9 15874802 G-T Homo INTRON
SBS Chr10 44363 C-T Hetero INTERGENIC
SBS Chr10 4774510 G-C Hetero INTERGENIC
SBS Chr10 4774511 C-A Hetero INTERGENIC
SBS Chr10 19099032 C-A Homo INTERGENIC
SBS Chr10 19712447 C-T Homo NON_SYNONYMOUS_CODING OsKitaake10g146000
SBS Chr11 9571276 G-A Hetero INTERGENIC
SBS Chr11 12082564 G-C Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 522879 522881 2
Deletion Chr7 4470303 4470307 4 OsKitaake07g056000
Deletion Chr12 4539985 4539992 7
Deletion Chr11 4980130 4980132 2 OsKitaake11g063400
Deletion Chr7 6958272 6958276 4
Deletion Chr11 7383351 7383352 1
Deletion Chr4 9111594 9111595 1
Deletion Chr11 10627907 10627912 5
Deletion Chr6 12074149 12074150 1
Deletion Chr10 21546573 21546586 13
Deletion Chr7 21738545 21738546 1
Deletion Chr4 22551889 22551890 1 OsKitaake04g133400
Deletion Chr5 24846352 24846353 1 OsKitaake05g204200
Deletion Chr1 27284205 27284217 12
Deletion Chr11 28634216 28634230 14
Deletion Chr3 28755837 28755861 24
Deletion Chr3 32894001 32924000 29999 3

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 25672160 25672162 1
Insertion Chr12 3708142 3708145 2
Insertion Chr12 15740296 15740299 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 36654304 36909065 OsKitaake03g408000

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 1686588 Chr2 19817753
Translocation Chr10 1686594 Chr2 19818021

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5848183	C-G	Hetero	INTERGENIC
SBS	Chr1	10244937	C-A	Homo	INTERGENIC
SBS	Chr1	25422277	A-G	Hetero	INTERGENIC
SBS	Chr1	35241293	C-T	Homo	INTERGENIC
SBS	Chr1	43579582	C-T	Hetero	INTERGENIC
SBS	Chr2	9489017	C-T	Hetero	INTERGENIC
SBS	Chr2	18870235	G-A	Homo	INTERGENIC
SBS	Chr2	21296077	T-A	Homo	INTERGENIC
SBS	Chr2	24846543	G-T	Hetero	INTERGENIC
SBS	Chr2	24979427	C-G	Hetero	INTERGENIC
SBS	Chr3	3836882	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g054500
SBS	Chr3	18451139	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	30738882	G-A	Homo	INTERGENIC
SBS	Chr3	33644885	C-T	Homo	INTERGENIC
SBS	Chr4	17285422	A-G	Hetero	INTERGENIC
SBS	Chr4	19951610	T-C	Hetero	INTERGENIC
SBS	Chr5	4375946	G-T	Hetero	INTERGENIC
SBS	Chr6	2110898	T-A	Hetero	INTERGENIC
SBS	Chr6	4580923	G-A	Hetero	INTERGENIC
SBS	Chr6	14307104	T-C	Homo	INTERGENIC
SBS	Chr6	14729481	G-A	Homo	INTERGENIC
SBS	Chr7	5619372	G-T	Homo	INTERGENIC
SBS	Chr7	17895862	C-T	Hetero	INTERGENIC
SBS	Chr8	12187498	T-C	Homo	INTERGENIC
SBS	Chr8	17221323	T-C	Homo	INTERGENIC
SBS	Chr9	2205254	C-T	Hetero	INTRON
SBS	Chr9	5239896	T-C	Hetero	INTERGENIC
SBS	Chr9	12420485	C-T	Hetero	INTERGENIC
SBS	Chr9	14065054	C-T	Homo	INTERGENIC
SBS	Chr9	15874802	G-T	Homo	INTRON
SBS	Chr10	44363	C-T	Hetero	INTERGENIC
SBS	Chr10	4774510	G-C	Hetero	INTERGENIC
SBS	Chr10	4774511	C-A	Hetero	INTERGENIC
SBS	Chr10	19099032	C-A	Homo	INTERGENIC
SBS	Chr10	19712447	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g146000
SBS	Chr11	9571276	G-A	Hetero	INTERGENIC
SBS	Chr11	12082564	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	522879	522881	2
Deletion	Chr7	4470303	4470307	4	OsKitaake07g056000
Deletion	Chr12	4539985	4539992	7
Deletion	Chr11	4980130	4980132	2	OsKitaake11g063400
Deletion	Chr7	6958272	6958276	4
Deletion	Chr11	7383351	7383352	1
Deletion	Chr4	9111594	9111595	1
Deletion	Chr11	10627907	10627912	5
Deletion	Chr6	12074149	12074150	1
Deletion	Chr10	21546573	21546586	13
Deletion	Chr7	21738545	21738546	1
Deletion	Chr4	22551889	22551890	1	OsKitaake04g133400
Deletion	Chr5	24846352	24846353	1	OsKitaake05g204200
Deletion	Chr1	27284205	27284217	12
Deletion	Chr11	28634216	28634230	14
Deletion	Chr3	28755837	28755861	24
Deletion	Chr3	32894001	32924000	29999	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	36654304	36909065	OsKitaake03g408000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes