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Mutant Information

Mutant Name	FN2317 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2317 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 27904116 A-T Hetero INTERGENIC
SBS Chr1 28258010 G-C Homo INTERGENIC
SBS Chr1 42104666 C-T Hetero INTERGENIC
SBS Chr2 4127405 C-T Hetero INTERGENIC
SBS Chr2 20648847 G-A Hetero INTERGENIC
SBS Chr2 27110222 C-T Hetero INTERGENIC
SBS Chr2 27346243 G-A Hetero INTERGENIC
SBS Chr2 34375844 C-G Hetero INTERGENIC
SBS Chr2 34375845 T-C Hetero INTERGENIC
SBS Chr3 9179074 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 16957575 G-A Homo INTRON
SBS Chr3 28391701 G-A Hetero INTRON
SBS Chr3 30515510 C-T Hetero INTERGENIC
SBS Chr4 5506560 C-T Hetero INTERGENIC
SBS Chr4 6629217 T-C Hetero INTERGENIC
SBS Chr4 13933050 T-C Hetero INTERGENIC
SBS Chr5 6330376 C-T Hetero INTERGENIC
SBS Chr5 13725339 T-A Homo INTERGENIC
SBS Chr5 21832663 G-C Homo INTERGENIC
SBS Chr5 21833544 C-T Homo INTERGENIC
SBS Chr6 2734975 T-A Hetero INTERGENIC
SBS Chr6 4799994 A-C Homo INTERGENIC
SBS Chr7 18106203 G-A Homo INTRON
SBS Chr7 20810142 G-A Hetero UTR_3_PRIME
SBS Chr8 20029886 T-A Homo INTERGENIC
SBS Chr9 8311378 G-A Homo INTERGENIC
SBS Chr10 396067 T-A Hetero INTERGENIC
SBS Chr10 8999428 G-A Homo UTR_3_PRIME
SBS Chr10 9526663 C-T Hetero INTERGENIC
SBS Chr10 12355738 C-T Homo STOP_GAINED OsKitaake10g074200
SBS Chr10 13145000 C-T Homo INTERGENIC
SBS Chr11 1618733 C-T Hetero INTRON
SBS Chr11 8548777 C-A Hetero INTERGENIC
SBS Chr11 9163642 A-G Hetero INTERGENIC
SBS Chr11 11503379 G-A Homo INTERGENIC
SBS Chr11 20062369 C-T Homo INTERGENIC
SBS Chr11 24492145 C-T Hetero INTERGENIC
SBS Chr12 3097611 A-T Hetero INTERGENIC
SBS Chr12 3347703 T-G Hetero INTERGENIC
SBS Chr12 9779638 T-G Hetero INTERGENIC
SBS Chr12 19786405 T-G Homo INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 5456536 5456547 11
Deletion Chr5 8021042 8021043 1
Deletion Chr6 9425302 9425322 20
Deletion Chr12 16816133 16816134 1
Deletion Chr9 17513118 17513126 8 OsKitaake09g132000
Deletion Chr3 19367504 19367505 1
Deletion Chr6 21367835 21367840 5
Deletion Chr5 21735301 21735309 8
Deletion Chr3 22877913 22877935 22
Deletion Chr2 26639001 26697000 57999 7
Deletion Chr2 33003920 33003924 4
Deletion Chr1 43839163 43839165 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 5208074 5208077 2
Insertion Chr4 19348015 19348018 2
Insertion Chr9 19668113 19668116 2
Insertion Chr4 4771841 4771843 1

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 4431437 Chr9 210612

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27904116	A-T	Hetero	INTERGENIC
SBS	Chr1	28258010	G-C	Homo	INTERGENIC
SBS	Chr1	42104666	C-T	Hetero	INTERGENIC
SBS	Chr2	4127405	C-T	Hetero	INTERGENIC
SBS	Chr2	20648847	G-A	Hetero	INTERGENIC
SBS	Chr2	27110222	C-T	Hetero	INTERGENIC
SBS	Chr2	27346243	G-A	Hetero	INTERGENIC
SBS	Chr2	34375844	C-G	Hetero	INTERGENIC
SBS	Chr2	34375845	T-C	Hetero	INTERGENIC
SBS	Chr3	9179074	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	16957575	G-A	Homo	INTRON
SBS	Chr3	28391701	G-A	Hetero	INTRON
SBS	Chr3	30515510	C-T	Hetero	INTERGENIC
SBS	Chr4	5506560	C-T	Hetero	INTERGENIC
SBS	Chr4	6629217	T-C	Hetero	INTERGENIC
SBS	Chr4	13933050	T-C	Hetero	INTERGENIC
SBS	Chr5	6330376	C-T	Hetero	INTERGENIC
SBS	Chr5	13725339	T-A	Homo	INTERGENIC
SBS	Chr5	21832663	G-C	Homo	INTERGENIC
SBS	Chr5	21833544	C-T	Homo	INTERGENIC
SBS	Chr6	2734975	T-A	Hetero	INTERGENIC
SBS	Chr6	4799994	A-C	Homo	INTERGENIC
SBS	Chr7	18106203	G-A	Homo	INTRON
SBS	Chr7	20810142	G-A	Hetero	UTR_3_PRIME
SBS	Chr8	20029886	T-A	Homo	INTERGENIC
SBS	Chr9	8311378	G-A	Homo	INTERGENIC
SBS	Chr10	396067	T-A	Hetero	INTERGENIC
SBS	Chr10	8999428	G-A	Homo	UTR_3_PRIME
SBS	Chr10	9526663	C-T	Hetero	INTERGENIC
SBS	Chr10	12355738	C-T	Homo	STOP_GAINED	OsKitaake10g074200
SBS	Chr10	13145000	C-T	Homo	INTERGENIC
SBS	Chr11	1618733	C-T	Hetero	INTRON
SBS	Chr11	8548777	C-A	Hetero	INTERGENIC
SBS	Chr11	9163642	A-G	Hetero	INTERGENIC
SBS	Chr11	11503379	G-A	Homo	INTERGENIC
SBS	Chr11	20062369	C-T	Homo	INTERGENIC
SBS	Chr11	24492145	C-T	Hetero	INTERGENIC
SBS	Chr12	3097611	A-T	Hetero	INTERGENIC
SBS	Chr12	3347703	T-G	Hetero	INTERGENIC
SBS	Chr12	9779638	T-G	Hetero	INTERGENIC
SBS	Chr12	19786405	T-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	5456536	5456547	11
Deletion	Chr5	8021042	8021043	1
Deletion	Chr6	9425302	9425322	20
Deletion	Chr12	16816133	16816134	1
Deletion	Chr9	17513118	17513126	8	OsKitaake09g132000
Deletion	Chr3	19367504	19367505	1
Deletion	Chr6	21367835	21367840	5
Deletion	Chr5	21735301	21735309	8
Deletion	Chr3	22877913	22877935	22
Deletion	Chr2	26639001	26697000	57999	7
Deletion	Chr2	33003920	33003924	4
Deletion	Chr1	43839163	43839165	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	4431437	Chr9	210612

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes