Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN2318 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2318 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 6337608 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 26831888 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 27103299 | G-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 35919012 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 10081609 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 25912100 | G-T | Hetero | INTRON | |
| SBS | Chr3 | 21299915 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 23791540 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 24484879 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 29138032 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 33343854 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 3691802 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 12139051 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g058900 |
| SBS | Chr4 | 22531413 | C-T | Hetero | INTRON | |
| SBS | Chr5 | 1334748 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 15234623 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 30253521 | A-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 1940730 | A-T | Homo | INTRON | |
| SBS | Chr6 | 9410580 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 20895457 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 6149480 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 9276202 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 14003607 | A-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 28003665 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g234700 |
| SBS | Chr9 | 8183625 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 8183628 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 20130944 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 16526073 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 11811398 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 20170841 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 14172977 | C-T | Hetero | INTERGENIC |
Deletions: 19
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 1774368 | 1774370 | 2 | |
| Deletion | Chr10 | 2797848 | 2797856 | 8 | |
| Deletion | Chr1 | 3761320 | 3761321 | 1 | OsKitaake01g050200 |
| Deletion | Chr7 | 4187126 | 4187128 | 2 | |
| Deletion | Chr6 | 6593631 | 6593636 | 5 | |
| Deletion | Chr7 | 7598218 | 7598220 | 2 | |
| Deletion | Chr11 | 7878167 | 7878174 | 7 | |
| Deletion | Chr4 | 12139017 | 12139040 | 23 | OsKitaake04g058900 |
| Deletion | Chr2 | 13844476 | 13844477 | 1 | |
| Deletion | Chr5 | 15533001 | 15662000 | 128999 | 11 |
| Deletion | Chr5 | 15684001 | 15808000 | 123999 | 8 |
| Deletion | Chr12 | 16571204 | 16571209 | 5 | |
| Deletion | Chr4 | 24476068 | 24476081 | 13 | |
| Deletion | Chr5 | 26822060 | 26822066 | 6 | |
| Deletion | Chr8 | 26836622 | 26836626 | 4 | |
| Deletion | Chr3 | 30256643 | 30256651 | 8 | |
| Deletion | Chr2 | 34006653 | 34006655 | 2 | |
| Deletion | Chr3 | 34854737 | 34854738 | 1 | |
| Deletion | Chr1 | 43366000 | 43366001 | 1 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 3150617 | 3150620 | 2 | |
| Insertion | Chr2 | 737664 | 737667 | 2 | |
| Insertion | Chr8 | 4831893 | 4831897 | 3 | |
| Insertion | Chr10 | 12327987 | 12327989 | 1 |